Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1136

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1134 and Shewana3_1135 are separated by 65 nucleotidesShewana3_1135 and Shewana3_1136 are separated by 189 nucleotidesShewana3_1136 and Shewana3_1137 are separated by 30 nucleotidesShewana3_1137 and Shewana3_1138 are separated by 193 nucleotides Shewana3_1134: Shewana3_1134 - cytochrome B561 (RefSeq), at 1,339,242 to 1,339,931 _1134 Shewana3_1135: Shewana3_1135 - cytochrome c, class II (RefSeq), at 1,339,997 to 1,340,446 _1135 Shewana3_1136: Shewana3_1136 - Trp operon repressor (RefSeq), at 1,340,636 to 1,340,911 _1136 Shewana3_1137: Shewana3_1137 - hypothetical protein (RefSeq), at 1,340,942 to 1,341,319 _1137 Shewana3_1138: Shewana3_1138 - peptidylprolyl isomerase, FKBP-type (RefSeq), at 1,341,513 to 1,342,181 _1138 Position (kb) 1340 1341Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1339.640 kb on - strand, within Shewana3_1134at 1339.719 kb on - strand, within Shewana3_1134at 1339.778 kb on + strand, within Shewana3_1134at 1339.778 kb on + strand, within Shewana3_1134at 1339.917 kb on - strandat 1339.943 kb on - strandat 1340.022 kb on - strandat 1340.041 kb on - strandat 1340.186 kb on + strand, within Shewana3_1135at 1340.186 kb on + strand, within Shewana3_1135at 1340.318 kb on + strand, within Shewana3_1135at 1340.397 kb on + strand, within Shewana3_1135at 1340.541 kb on - strandat 1340.560 kb on - strandat 1340.688 kb on + strand, within Shewana3_1136at 1340.754 kb on + strand, within Shewana3_1136at 1340.845 kb on - strand, within Shewana3_1136at 1340.933 kb on - strandat 1340.940 kb on + strandat 1340.985 kb on - strand, within Shewana3_1137at 1341.106 kb on - strand, within Shewana3_1137at 1341.154 kb on + strand, within Shewana3_1137at 1341.202 kb on + strand, within Shewana3_1137at 1341.250 kb on + strand, within Shewana3_1137at 1341.266 kb on + strand, within Shewana3_1137at 1341.482 kb on + strandat 1341.490 kb on - strandat 1341.514 kb on - strandat 1341.863 kb on - strand, within Shewana3_1138

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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1,339,640 - Shewana3_1134 0.58 -4.2
1,339,719 - Shewana3_1134 0.69 -0.4
1,339,778 + Shewana3_1134 0.78 +0.2
1,339,778 + Shewana3_1134 0.78 +0.6
1,339,917 - +0.1
1,339,943 - -1.0
1,340,022 - +0.3
1,340,041 - -1.6
1,340,186 + Shewana3_1135 0.42 +0.2
1,340,186 + Shewana3_1135 0.42 +1.2
1,340,318 + Shewana3_1135 0.71 +0.4
1,340,397 + Shewana3_1135 0.89 -0.3
1,340,541 - -1.1
1,340,560 - +0.2
1,340,688 + Shewana3_1136 0.19 +0.4
1,340,754 + Shewana3_1136 0.43 +0.3
1,340,845 - Shewana3_1136 0.76 +0.9
1,340,933 - +0.2
1,340,940 + +0.2
1,340,985 - Shewana3_1137 0.11 +0.1
1,341,106 - Shewana3_1137 0.43 -0.3
1,341,154 + Shewana3_1137 0.56 -0.0
1,341,202 + Shewana3_1137 0.69 +0.4
1,341,250 + Shewana3_1137 0.81 -0.3
1,341,266 + Shewana3_1137 0.86 +0.2
1,341,482 + +0.4
1,341,490 - -1.2
1,341,514 - -2.4
1,341,863 - Shewana3_1138 0.52 -2.3

Or see this region's nucleotide sequence