Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0677

Experiment: L-Asparagine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_0675 and Shewana3_0676 overlap by 4 nucleotidesShewana3_0676 and Shewana3_0677 overlap by 1 nucleotidesShewana3_0677 and Shewana3_0678 are separated by 562 nucleotides Shewana3_0675: Shewana3_0675 - hypothetical protein (RefSeq), at 794,811 to 795,371 _0675 Shewana3_0676: Shewana3_0676 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (RefSeq), at 795,368 to 795,919 _0676 Shewana3_0677: Shewana3_0677 - KpsF/GutQ family protein (RefSeq), at 795,919 to 796,896 _0677 Shewana3_0678: Shewana3_0678 - ABC transporter related (RefSeq), at 797,459 to 798,277 _0678 Position (kb) 795 796 797Strain fitness (log2 ratio) -2 -1 0 1at 796.987 kb on - strandat 797.034 kb on - strandat 797.366 kb on - strandat 797.409 kb on + strandat 797.651 kb on + strand, within Shewana3_0678at 797.664 kb on + strand, within Shewana3_0678at 797.778 kb on + strand, within Shewana3_0678

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
remove
796,987 - -1.3
797,034 - +0.7
797,366 - +0.6
797,409 + +0.2
797,651 + Shewana3_0678 0.23 -0.4
797,664 + Shewana3_0678 0.25 +0.4
797,778 + Shewana3_0678 0.39 -2.2

Or see this region's nucleotide sequence