Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0502 and Shewana3_0503 are separated by 149 nucleotides
Shewana3_0502: Shewana3_0502 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 588,256 to 593,202
_0502
Shewana3_0503: Shewana3_0503 - flavoprotein oxygenase (RefSeq), at 593,352 to 593,978
_0503
Position (kb) 593
594 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 592.386 kb on + strand, within Shewana3_0502 at 592.472 kb on - strand, within Shewana3_0502 at 592.523 kb on + strand, within Shewana3_0502 at 592.530 kb on - strand, within Shewana3_0502 at 592.530 kb on - strand, within Shewana3_0502 at 592.577 kb on - strand, within Shewana3_0502 at 592.587 kb on - strand, within Shewana3_0502 at 592.587 kb on - strand, within Shewana3_0502 at 592.637 kb on + strand, within Shewana3_0502 at 592.646 kb on + strand, within Shewana3_0502 at 592.654 kb on - strand, within Shewana3_0502 at 592.659 kb on - strand, within Shewana3_0502 at 592.666 kb on - strand, within Shewana3_0502 at 592.887 kb on - strand at 592.889 kb on + strand at 592.931 kb on - strand at 592.931 kb on - strand at 592.945 kb on - strand at 593.142 kb on - strand at 593.254 kb on + strand at 593.319 kb on + strand at 593.555 kb on - strand, within Shewana3_0503 at 593.667 kb on - strand, within Shewana3_0503 at 593.697 kb on - strand, within Shewana3_0503 at 593.759 kb on + strand, within Shewana3_0503 at 593.759 kb on + strand, within Shewana3_0503 at 593.833 kb on - strand, within Shewana3_0503 at 593.960 kb on + strand at 593.973 kb on + strand at 594.299 kb on + strand at 594.301 kb on + strand at 594.307 kb on - strand at 594.328 kb on - strand at 594.355 kb on + strand at 594.375 kb on + strand at 594.474 kb on + strand at 594.474 kb on + strand at 594.474 kb on + strand at 594.474 kb on + strand at 594.482 kb on - strand at 594.543 kb on + strand at 594.543 kb on + strand at 594.543 kb on + strand at 594.551 kb on - strand at 594.559 kb on + strand at 594.610 kb on + strand at 594.619 kb on - strand at 594.629 kb on + strand at 594.651 kb on - strand at 594.651 kb on - strand at 594.683 kb on + strand at 594.688 kb on + strand at 594.707 kb on + strand at 594.708 kb on + strand at 594.708 kb on + strand at 594.716 kb on - strand at 594.718 kb on + strand at 594.724 kb on + strand at 594.724 kb on + strand at 594.724 kb on + strand at 594.732 kb on - strand at 594.732 kb on - strand at 594.732 kb on - strand at 594.732 kb on - strand at 594.732 kb on - strand at 594.732 kb on - strand at 594.744 kb on + strand at 594.752 kb on - strand at 594.795 kb on + strand at 594.803 kb on - strand at 594.811 kb on - strand at 594.813 kb on - strand at 594.820 kb on + strand at 594.855 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.913 kb on + strand at 594.921 kb on - strand at 594.921 kb on - strand at 594.921 kb on - strand at 594.921 kb on - strand at 594.921 kb on - strand at 594.921 kb on - strand at 594.921 kb on - strand at 594.921 kb on - strand at 594.931 kb on + strand at 594.949 kb on + strand at 594.957 kb on + strand at 594.957 kb on + strand at 594.957 kb on + strand at 594.965 kb on + strand at 594.965 kb on - strand at 594.972 kb on + strand at 594.972 kb on + strand at 594.972 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 592,386 + Shewana3_0502 0.83 +0.3 592,472 - Shewana3_0502 0.85 -2.6 592,523 + Shewana3_0502 0.86 +0.2 592,530 - Shewana3_0502 0.86 +0.8 592,530 - Shewana3_0502 0.86 +0.1 592,577 - Shewana3_0502 0.87 +0.6 592,587 - Shewana3_0502 0.88 -1.1 592,587 - Shewana3_0502 0.88 -0.2 592,637 + Shewana3_0502 0.89 +0.4 592,646 + Shewana3_0502 0.89 +0.3 592,654 - Shewana3_0502 0.89 +0.3 592,659 - Shewana3_0502 0.89 +0.2 592,666 - Shewana3_0502 0.89 +0.4 592,887 - +0.3 592,889 + -0.0 592,931 - -2.6 592,931 - -1.1 592,945 - +0.5 593,142 - +1.1 593,254 + -0.8 593,319 + +0.3 593,555 - Shewana3_0503 0.32 +0.5 593,667 - Shewana3_0503 0.50 +0.3 593,697 - Shewana3_0503 0.55 +0.0 593,759 + Shewana3_0503 0.65 +1.0 593,759 + Shewana3_0503 0.65 +0.2 593,833 - Shewana3_0503 0.77 +0.5 593,960 + -0.8 593,973 + +0.3 594,299 + -0.5 594,301 + -1.6 594,307 - +0.0 594,328 - +0.5 594,355 + -0.8 594,375 + +0.3 594,474 + +0.4 594,474 + -2.9 594,474 + -1.0 594,474 + +0.4 594,482 - -0.9 594,543 + -0.9 594,543 + -0.2 594,543 + -0.0 594,551 - -1.3 594,559 + +0.1 594,610 + -4.2 594,619 - +0.1 594,629 + +0.2 594,651 - -1.6 594,651 - +0.5 594,683 + -1.1 594,688 + +0.1 594,707 + +0.8 594,708 + -1.2 594,708 + -1.4 594,716 - +0.8 594,718 + -1.0 594,724 + -0.9 594,724 + +0.4 594,724 + +0.1 594,732 - +0.4 594,732 - +0.7 594,732 - +1.1 594,732 - -0.4 594,732 - -0.8 594,732 - +0.8 594,744 + -2.3 594,752 - -0.7 594,795 + -0.1 594,803 - +0.6 594,811 - +0.4 594,813 - -0.4 594,820 + -0.6 594,855 + -0.3 594,913 + -1.1 594,913 + +0.2 594,913 + +0.5 594,913 + -1.6 594,913 + +0.3 594,913 + +1.0 594,913 + -0.2 594,913 + +0.3 594,913 + -0.7 594,913 + +0.5 594,913 + +0.2 594,913 + +0.6 594,921 - -0.9 594,921 - +1.1 594,921 - -1.3 594,921 - -0.9 594,921 - +0.4 594,921 - +1.2 594,921 - -0.3 594,921 - +1.6 594,931 + -1.7 594,949 + +0.5 594,957 + -1.1 594,957 + -1.0 594,957 + +0.0 594,965 + -0.0 594,965 - -1.6 594,972 + -1.2 594,972 + +0.0 594,972 + -0.1
Or see this region's nucleotide sequence