Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0286 and Shewana3_0287 are separated by 303 nucleotides Shewana3_0287 and Shewana3_0288 are separated by 12 nucleotides Shewana3_0288 and Shewana3_0289 are separated by 21 nucleotides Shewana3_0289 and Shewana3_0290 are separated by 17 nucleotides
Shewana3_0286: Shewana3_0286 - TonB-dependent receptor (RefSeq), at 318,683 to 320,854
_0286
Shewana3_0287: Shewana3_0287 - hypothetical protein (RefSeq), at 321,158 to 321,349
_0287
Shewana3_0288: Shewana3_0288 - peptidase M23B (RefSeq), at 321,362 to 321,874
_0288
Shewana3_0289: Shewana3_0289 - hypothetical protein (RefSeq), at 321,896 to 322,477
_0289
Shewana3_0290: Shewana3_0290 - CHAP domain-containing protein (RefSeq), at 322,495 to 323,184
_0290
Position (kb) 321
322 Strain fitness (log2 ratio) -2
-1
0
1 at 320.415 kb on - strand, within Shewana3_0286 at 320.493 kb on + strand, within Shewana3_0286 at 320.493 kb on + strand, within Shewana3_0286 at 320.568 kb on + strand, within Shewana3_0286 at 320.793 kb on + strand at 320.859 kb on - strand at 320.878 kb on - strand at 320.898 kb on - strand at 321.113 kb on + strand at 321.306 kb on + strand, within Shewana3_0287 at 321.357 kb on + strand at 321.441 kb on + strand, within Shewana3_0288 at 321.444 kb on - strand, within Shewana3_0288 at 321.449 kb on - strand, within Shewana3_0288 at 321.456 kb on - strand, within Shewana3_0288 at 321.462 kb on + strand, within Shewana3_0288 at 321.468 kb on - strand, within Shewana3_0288 at 321.516 kb on + strand, within Shewana3_0288 at 321.526 kb on - strand, within Shewana3_0288 at 321.566 kb on - strand, within Shewana3_0288 at 321.653 kb on - strand, within Shewana3_0288 at 321.724 kb on + strand, within Shewana3_0288 at 321.873 kb on + strand at 321.885 kb on + strand at 321.885 kb on + strand at 321.893 kb on - strand at 321.975 kb on + strand, within Shewana3_0289 at 322.128 kb on + strand, within Shewana3_0289 at 322.185 kb on - strand, within Shewana3_0289 at 322.220 kb on + strand, within Shewana3_0289 at 322.362 kb on + strand, within Shewana3_0289 at 322.362 kb on + strand, within Shewana3_0289 at 322.372 kb on + strand, within Shewana3_0289 at 322.408 kb on + strand, within Shewana3_0289 at 322.418 kb on + strand, within Shewana3_0289 at 322.551 kb on + strand at 322.552 kb on - strand at 322.606 kb on - strand, within Shewana3_0290 at 322.638 kb on - strand, within Shewana3_0290 at 322.696 kb on - strand, within Shewana3_0290 at 322.835 kb on - strand, within Shewana3_0290
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 320,415 - Shewana3_0286 0.80 -2.4 320,493 + Shewana3_0286 0.83 -1.6 320,493 + Shewana3_0286 0.83 -1.5 320,568 + Shewana3_0286 0.87 +0.1 320,793 + -0.4 320,859 - -0.0 320,878 - +0.1 320,898 - -1.2 321,113 + +0.7 321,306 + Shewana3_0287 0.77 -1.9 321,357 + +0.3 321,441 + Shewana3_0288 0.15 +0.3 321,444 - Shewana3_0288 0.16 -0.8 321,449 - Shewana3_0288 0.17 +0.4 321,456 - Shewana3_0288 0.18 +0.5 321,462 + Shewana3_0288 0.19 +0.3 321,468 - Shewana3_0288 0.21 +0.4 321,516 + Shewana3_0288 0.30 +0.2 321,526 - Shewana3_0288 0.32 +0.3 321,566 - Shewana3_0288 0.40 +0.1 321,653 - Shewana3_0288 0.57 +0.2 321,724 + Shewana3_0288 0.71 +0.2 321,873 + -0.1 321,885 + -1.2 321,885 + +0.6 321,893 - +0.2 321,975 + Shewana3_0289 0.14 +0.9 322,128 + Shewana3_0289 0.40 +0.5 322,185 - Shewana3_0289 0.50 +0.8 322,220 + Shewana3_0289 0.56 -1.0 322,362 + Shewana3_0289 0.80 -0.1 322,362 + Shewana3_0289 0.80 -0.3 322,372 + Shewana3_0289 0.82 -0.5 322,408 + Shewana3_0289 0.88 +0.1 322,418 + Shewana3_0289 0.90 -0.5 322,551 + -0.8 322,552 - +0.1 322,606 - Shewana3_0290 0.16 +0.6 322,638 - Shewana3_0290 0.21 -1.0 322,696 - Shewana3_0290 0.29 +0.4 322,835 - Shewana3_0290 0.49 +0.4
Or see this region's nucleotide sequence