Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0056 and Shewana3_0057 are separated by 577 nucleotides Shewana3_0057 and Shewana3_0058 are separated by 1 nucleotides Shewana3_0058 and Shewana3_0059 are separated by 44 nucleotides
Shewana3_0056: Shewana3_0056 - hypothetical protein (RefSeq), at 66,383 to 67,246
_0056
Shewana3_0057: Shewana3_0057 - TrkH family potassium uptake protein (RefSeq), at 67,824 to 69,185
_0057
Shewana3_0058: Shewana3_0058 - TrkA domain-containing protein (RefSeq), at 69,187 to 69,885
_0058
Shewana3_0059: Shewana3_0059 - two component transcriptional regulator (RefSeq), at 69,930 to 70,619
_0059
Position (kb)
67
68
69
70 Strain fitness (log2 ratio)
-2
-1
0
1 at 66.954 kb on - strand, within Shewana3_0056 at 66.964 kb on + strand, within Shewana3_0056 at 66.974 kb on - strand, within Shewana3_0056 at 67.013 kb on + strand, within Shewana3_0056 at 67.021 kb on - strand, within Shewana3_0056 at 67.164 kb on + strand at 67.280 kb on - strand at 67.365 kb on + strand at 67.414 kb on + strand at 67.665 kb on - strand at 67.787 kb on - strand at 67.813 kb on - strand at 67.823 kb on - strand at 68.209 kb on - strand, within Shewana3_0057 at 68.238 kb on + strand, within Shewana3_0057 at 68.414 kb on - strand, within Shewana3_0057 at 68.435 kb on + strand, within Shewana3_0057 at 68.453 kb on + strand, within Shewana3_0057 at 68.478 kb on + strand, within Shewana3_0057 at 68.497 kb on + strand, within Shewana3_0057 at 68.942 kb on - strand, within Shewana3_0057 at 69.152 kb on + strand at 69.152 kb on + strand at 69.152 kb on + strand at 69.160 kb on - strand at 69.160 kb on - strand at 69.160 kb on - strand at 69.174 kb on + strand at 69.192 kb on - strand at 69.245 kb on - strand at 69.261 kb on + strand, within Shewana3_0058 at 69.269 kb on - strand, within Shewana3_0058 at 69.310 kb on - strand, within Shewana3_0058 at 69.323 kb on + strand, within Shewana3_0058 at 69.391 kb on - strand, within Shewana3_0058 at 69.480 kb on + strand, within Shewana3_0058 at 69.495 kb on - strand, within Shewana3_0058 at 69.566 kb on + strand, within Shewana3_0058 at 69.699 kb on + strand, within Shewana3_0058 at 69.699 kb on + strand, within Shewana3_0058 at 69.860 kb on + strand at 69.907 kb on + strand at 69.927 kb on + strand at 69.927 kb on + strand at 69.927 kb on + strand at 69.935 kb on - strand at 69.935 kb on - strand at 69.935 kb on - strand at 69.935 kb on - strand at 70.150 kb on - strand, within Shewana3_0059 at 70.151 kb on - strand, within Shewana3_0059
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 66,954 - Shewana3_0056 0.66 -0.6 66,964 + Shewana3_0056 0.67 -1.6 66,974 - Shewana3_0056 0.68 +0.6 67,013 + Shewana3_0056 0.73 +0.2 67,021 - Shewana3_0056 0.74 +0.5 67,164 + +0.9 67,280 - -1.5 67,365 + +0.2 67,414 + -1.4 67,665 - +0.4 67,787 - +0.2 67,813 - +0.0 67,823 - +0.8 68,209 - Shewana3_0057 0.28 -1.5 68,238 + Shewana3_0057 0.30 -0.6 68,414 - Shewana3_0057 0.43 -1.9 68,435 + Shewana3_0057 0.45 +0.7 68,453 + Shewana3_0057 0.46 -1.5 68,478 + Shewana3_0057 0.48 +0.2 68,497 + Shewana3_0057 0.49 +0.4 68,942 - Shewana3_0057 0.82 -1.6 69,152 + +0.7 69,152 + +0.0 69,152 + +0.5 69,160 - -0.5 69,160 - +0.2 69,160 - +0.1 69,174 + +0.3 69,192 - +0.3 69,245 - -0.9 69,261 + Shewana3_0058 0.11 -0.1 69,269 - Shewana3_0058 0.12 +0.5 69,310 - Shewana3_0058 0.18 -0.2 69,323 + Shewana3_0058 0.19 +0.3 69,391 - Shewana3_0058 0.29 +0.3 69,480 + Shewana3_0058 0.42 -0.0 69,495 - Shewana3_0058 0.44 +0.4 69,566 + Shewana3_0058 0.54 -0.9 69,699 + Shewana3_0058 0.73 +0.5 69,699 + Shewana3_0058 0.73 -0.1 69,860 + +0.5 69,907 + -0.9 69,927 + -2.3 69,927 + +0.3 69,927 + +0.1 69,935 - -1.3 69,935 - -2.0 69,935 - -1.3 69,935 - -1.1 70,150 - Shewana3_0059 0.32 -1.0 70,151 - Shewana3_0059 0.32 +0.1
Or see this region's nucleotide sequence