Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0057

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0056 and Shewana3_0057 are separated by 577 nucleotidesShewana3_0057 and Shewana3_0058 are separated by 1 nucleotidesShewana3_0058 and Shewana3_0059 are separated by 44 nucleotides Shewana3_0056: Shewana3_0056 - hypothetical protein (RefSeq), at 66,383 to 67,246 _0056 Shewana3_0057: Shewana3_0057 - TrkH family potassium uptake protein (RefSeq), at 67,824 to 69,185 _0057 Shewana3_0058: Shewana3_0058 - TrkA domain-containing protein (RefSeq), at 69,187 to 69,885 _0058 Shewana3_0059: Shewana3_0059 - two component transcriptional regulator (RefSeq), at 69,930 to 70,619 _0059 Position (kb) 67 68 69 70Strain fitness (log2 ratio) -2 -1 0 1at 66.954 kb on - strand, within Shewana3_0056at 66.964 kb on + strand, within Shewana3_0056at 66.974 kb on - strand, within Shewana3_0056at 67.013 kb on + strand, within Shewana3_0056at 67.021 kb on - strand, within Shewana3_0056at 67.164 kb on + strandat 67.280 kb on - strandat 67.365 kb on + strandat 67.414 kb on + strandat 67.665 kb on - strandat 67.787 kb on - strandat 67.813 kb on - strandat 67.823 kb on - strandat 68.209 kb on - strand, within Shewana3_0057at 68.238 kb on + strand, within Shewana3_0057at 68.414 kb on - strand, within Shewana3_0057at 68.435 kb on + strand, within Shewana3_0057at 68.453 kb on + strand, within Shewana3_0057at 68.478 kb on + strand, within Shewana3_0057at 68.497 kb on + strand, within Shewana3_0057at 68.942 kb on - strand, within Shewana3_0057at 69.152 kb on + strandat 69.152 kb on + strandat 69.152 kb on + strandat 69.160 kb on - strandat 69.160 kb on - strandat 69.160 kb on - strandat 69.174 kb on + strandat 69.192 kb on - strandat 69.245 kb on - strandat 69.261 kb on + strand, within Shewana3_0058at 69.269 kb on - strand, within Shewana3_0058at 69.310 kb on - strand, within Shewana3_0058at 69.323 kb on + strand, within Shewana3_0058at 69.391 kb on - strand, within Shewana3_0058at 69.480 kb on + strand, within Shewana3_0058at 69.495 kb on - strand, within Shewana3_0058at 69.566 kb on + strand, within Shewana3_0058at 69.699 kb on + strand, within Shewana3_0058at 69.699 kb on + strand, within Shewana3_0058at 69.860 kb on + strandat 69.907 kb on + strandat 69.927 kb on + strandat 69.927 kb on + strandat 69.927 kb on + strandat 69.935 kb on - strandat 69.935 kb on - strandat 69.935 kb on - strandat 69.935 kb on - strandat 70.150 kb on - strand, within Shewana3_0059at 70.151 kb on - strand, within Shewana3_0059

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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66,954 - Shewana3_0056 0.66 -0.6
66,964 + Shewana3_0056 0.67 -1.6
66,974 - Shewana3_0056 0.68 +0.6
67,013 + Shewana3_0056 0.73 +0.2
67,021 - Shewana3_0056 0.74 +0.5
67,164 + +0.9
67,280 - -1.5
67,365 + +0.2
67,414 + -1.4
67,665 - +0.4
67,787 - +0.2
67,813 - +0.0
67,823 - +0.8
68,209 - Shewana3_0057 0.28 -1.5
68,238 + Shewana3_0057 0.30 -0.6
68,414 - Shewana3_0057 0.43 -1.9
68,435 + Shewana3_0057 0.45 +0.7
68,453 + Shewana3_0057 0.46 -1.5
68,478 + Shewana3_0057 0.48 +0.2
68,497 + Shewana3_0057 0.49 +0.4
68,942 - Shewana3_0057 0.82 -1.6
69,152 + +0.7
69,152 + +0.0
69,152 + +0.5
69,160 - -0.5
69,160 - +0.2
69,160 - +0.1
69,174 + +0.3
69,192 - +0.3
69,245 - -0.9
69,261 + Shewana3_0058 0.11 -0.1
69,269 - Shewana3_0058 0.12 +0.5
69,310 - Shewana3_0058 0.18 -0.2
69,323 + Shewana3_0058 0.19 +0.3
69,391 - Shewana3_0058 0.29 +0.3
69,480 + Shewana3_0058 0.42 -0.0
69,495 - Shewana3_0058 0.44 +0.4
69,566 + Shewana3_0058 0.54 -0.9
69,699 + Shewana3_0058 0.73 +0.5
69,699 + Shewana3_0058 0.73 -0.1
69,860 + +0.5
69,907 + -0.9
69,927 + -2.3
69,927 + +0.3
69,927 + +0.1
69,935 - -1.3
69,935 - -2.0
69,935 - -1.3
69,935 - -1.1
70,150 - Shewana3_0059 0.32 -1.0
70,151 - Shewana3_0059 0.32 +0.1

Or see this region's nucleotide sequence