Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gpsA and Shewana3_0055 are separated by 238 nucleotides Shewana3_0055 and Shewana3_0056 are separated by 722 nucleotides
Shewana3_0054: gpsA - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (RefSeq), at 63,221 to 64,237
gpsA
Shewana3_0055: Shewana3_0055 - hypothetical protein (RefSeq), at 64,476 to 65,660
_0055
Shewana3_0056: Shewana3_0056 - hypothetical protein (RefSeq), at 66,383 to 67,246
_0056
Position (kb)
64
65
66 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 64.344 kb on - strand at 64.397 kb on + strand at 64.404 kb on - strand at 64.474 kb on - strand at 64.518 kb on + strand at 64.744 kb on + strand, within Shewana3_0055 at 64.765 kb on + strand, within Shewana3_0055 at 64.767 kb on - strand, within Shewana3_0055 at 64.846 kb on + strand, within Shewana3_0055 at 64.925 kb on + strand, within Shewana3_0055 at 64.988 kb on + strand, within Shewana3_0055 at 64.989 kb on + strand, within Shewana3_0055 at 64.989 kb on + strand, within Shewana3_0055 at 65.178 kb on + strand, within Shewana3_0055 at 65.186 kb on - strand, within Shewana3_0055 at 65.315 kb on + strand, within Shewana3_0055 at 65.323 kb on - strand, within Shewana3_0055 at 65.331 kb on - strand, within Shewana3_0055 at 65.333 kb on + strand, within Shewana3_0055 at 65.358 kb on + strand, within Shewana3_0055 at 65.373 kb on + strand, within Shewana3_0055 at 65.388 kb on + strand, within Shewana3_0055 at 65.459 kb on - strand, within Shewana3_0055 at 65.495 kb on + strand, within Shewana3_0055 at 65.512 kb on + strand, within Shewana3_0055 at 65.520 kb on - strand, within Shewana3_0055 at 65.520 kb on - strand, within Shewana3_0055 at 65.520 kb on - strand, within Shewana3_0055 at 65.559 kb on - strand at 65.585 kb on - strand at 65.621 kb on + strand at 65.764 kb on - strand at 65.820 kb on + strand at 65.835 kb on - strand at 66.054 kb on - strand at 66.071 kb on - strand at 66.109 kb on - strand at 66.138 kb on - strand at 66.212 kb on + strand at 66.393 kb on - strand at 66.412 kb on + strand at 66.412 kb on + strand at 66.412 kb on + strand at 66.412 kb on + strand at 66.412 kb on + strand at 66.420 kb on - strand at 66.420 kb on - strand at 66.420 kb on - strand at 66.420 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 64,344 - -1.4 64,397 + -1.0 64,404 - -2.8 64,474 - +0.5 64,518 + +0.4 64,744 + Shewana3_0055 0.23 +0.4 64,765 + Shewana3_0055 0.24 +0.5 64,767 - Shewana3_0055 0.25 -0.8 64,846 + Shewana3_0055 0.31 +1.0 64,925 + Shewana3_0055 0.38 +0.2 64,988 + Shewana3_0055 0.43 +0.8 64,989 + Shewana3_0055 0.43 -1.1 64,989 + Shewana3_0055 0.43 -1.1 65,178 + Shewana3_0055 0.59 +0.3 65,186 - Shewana3_0055 0.60 +0.2 65,315 + Shewana3_0055 0.71 -0.9 65,323 - Shewana3_0055 0.71 -1.6 65,331 - Shewana3_0055 0.72 +0.1 65,333 + Shewana3_0055 0.72 -1.4 65,358 + Shewana3_0055 0.74 +0.3 65,373 + Shewana3_0055 0.76 +0.3 65,388 + Shewana3_0055 0.77 -1.5 65,459 - Shewana3_0055 0.83 +0.4 65,495 + Shewana3_0055 0.86 +0.0 65,512 + Shewana3_0055 0.87 -1.3 65,520 - Shewana3_0055 0.88 +0.7 65,520 - Shewana3_0055 0.88 -0.9 65,520 - Shewana3_0055 0.88 +0.2 65,559 - +0.0 65,585 - -1.3 65,621 + +0.9 65,764 - -0.7 65,820 + -0.9 65,835 - -0.5 66,054 - +0.2 66,071 - -0.2 66,109 - -0.1 66,138 - +0.1 66,212 + +1.0 66,393 - +0.3 66,412 + -1.0 66,412 + -0.5 66,412 + -1.1 66,412 + -1.0 66,412 + +0.3 66,420 - +0.4 66,420 - +0.5 66,420 - -1.0 66,420 - -0.1
Or see this region's nucleotide sequence