Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4365 and Shewana3_4366 overlap by 8 nucleotides Shewana3_4366 and Shewana3_4367 are separated by 157 nucleotides
Shewana3_4365: Shewana3_4365 - chromate transporter (RefSeq), at 253,250 to 254,617
_4365
Shewana3_4366: Shewana3_4366 - chromate resistance exported protein (RefSeq), at 254,610 to 255,548
_4366
Shewana3_4367: Shewana3_4367 - phage integrase family protein (RefSeq), at 255,706 to 256,713
_4367
Position (kb) 254
255
256 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 253.733 kb on - strand, within Shewana3_4365 at 253.777 kb on - strand, within Shewana3_4365 at 253.887 kb on + strand, within Shewana3_4365 at 253.892 kb on + strand, within Shewana3_4365 at 253.895 kb on - strand, within Shewana3_4365 at 253.895 kb on - strand, within Shewana3_4365 at 254.045 kb on - strand, within Shewana3_4365 at 254.282 kb on - strand, within Shewana3_4365 at 254.389 kb on + strand, within Shewana3_4365 at 254.408 kb on - strand, within Shewana3_4365 at 254.412 kb on + strand, within Shewana3_4365 at 254.522 kb on + strand at 254.857 kb on + strand, within Shewana3_4366 at 254.865 kb on - strand, within Shewana3_4366 at 254.941 kb on + strand, within Shewana3_4366 at 255.027 kb on - strand, within Shewana3_4366 at 255.081 kb on + strand, within Shewana3_4366 at 255.218 kb on + strand, within Shewana3_4366 at 255.450 kb on + strand, within Shewana3_4366 at 255.851 kb on + strand, within Shewana3_4367 at 255.851 kb on + strand, within Shewana3_4367 at 255.861 kb on + strand, within Shewana3_4367 at 255.871 kb on + strand, within Shewana3_4367 at 255.879 kb on - strand, within Shewana3_4367 at 256.105 kb on - strand, within Shewana3_4367 at 256.141 kb on - strand, within Shewana3_4367 at 256.191 kb on + strand, within Shewana3_4367 at 256.339 kb on - strand, within Shewana3_4367 at 256.351 kb on - strand, within Shewana3_4367 at 256.421 kb on + strand, within Shewana3_4367 at 256.485 kb on - strand, within Shewana3_4367 at 256.485 kb on - strand, within Shewana3_4367
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 253,733 - Shewana3_4365 0.35 +0.1 253,777 - Shewana3_4365 0.39 -0.6 253,887 + Shewana3_4365 0.47 +0.8 253,892 + Shewana3_4365 0.47 -0.1 253,895 - Shewana3_4365 0.47 -4.4 253,895 - Shewana3_4365 0.47 -2.6 254,045 - Shewana3_4365 0.58 +0.2 254,282 - Shewana3_4365 0.75 -1.3 254,389 + Shewana3_4365 0.83 -2.5 254,408 - Shewana3_4365 0.85 -0.1 254,412 + Shewana3_4365 0.85 -0.9 254,522 + +0.4 254,857 + Shewana3_4366 0.26 -0.6 254,865 - Shewana3_4366 0.27 +0.5 254,941 + Shewana3_4366 0.35 +0.4 255,027 - Shewana3_4366 0.44 -1.0 255,081 + Shewana3_4366 0.50 +2.3 255,218 + Shewana3_4366 0.65 +1.6 255,450 + Shewana3_4366 0.89 +4.5 255,851 + Shewana3_4367 0.14 -2.7 255,851 + Shewana3_4367 0.14 -2.0 255,861 + Shewana3_4367 0.15 +0.3 255,871 + Shewana3_4367 0.16 -1.2 255,879 - Shewana3_4367 0.17 +0.8 256,105 - Shewana3_4367 0.40 -0.2 256,141 - Shewana3_4367 0.43 -1.1 256,191 + Shewana3_4367 0.48 +0.1 256,339 - Shewana3_4367 0.63 -0.8 256,351 - Shewana3_4367 0.64 -0.6 256,421 + Shewana3_4367 0.71 +0.5 256,485 - Shewana3_4367 0.77 +0.6 256,485 - Shewana3_4367 0.77 +0.4
Or see this region's nucleotide sequence