Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4352 and Shewana3_4353 overlap by 8 nucleotides Shewana3_4353 and Shewana3_4354 are separated by 76 nucleotides Shewana3_4354 and Shewana3_4355 are separated by 1 nucleotides
Shewana3_4352: Shewana3_4352 - hypothetical protein (RefSeq), at 236,921 to 238,486
_4352
Shewana3_4353: Shewana3_4353 - hypothetical protein (RefSeq), at 238,479 to 238,871
_4353
Shewana3_4354: Shewana3_4354 - UBA/THIF-type NAD/FAD binding protein (RefSeq), at 238,948 to 240,675
_4354
Shewana3_4355: Shewana3_4355 - hypothetical protein (RefSeq), at 240,677 to 241,708
_4355
Position (kb) 238
239
240
241 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 237.995 kb on + strand, within Shewana3_4352 at 238.003 kb on - strand, within Shewana3_4352 at 238.004 kb on - strand, within Shewana3_4352 at 238.041 kb on + strand, within Shewana3_4352 at 238.041 kb on + strand, within Shewana3_4352 at 238.041 kb on + strand, within Shewana3_4352 at 238.041 kb on + strand, within Shewana3_4352 at 238.049 kb on - strand, within Shewana3_4352 at 238.049 kb on - strand, within Shewana3_4352 at 238.117 kb on - strand, within Shewana3_4352 at 238.231 kb on + strand, within Shewana3_4352 at 238.231 kb on + strand, within Shewana3_4352 at 238.239 kb on - strand, within Shewana3_4352 at 238.239 kb on - strand, within Shewana3_4352 at 238.239 kb on - strand, within Shewana3_4352 at 238.269 kb on + strand, within Shewana3_4352 at 238.269 kb on + strand, within Shewana3_4352 at 238.269 kb on + strand, within Shewana3_4352 at 238.277 kb on - strand, within Shewana3_4352 at 238.277 kb on - strand, within Shewana3_4352 at 238.277 kb on - strand, within Shewana3_4352 at 238.277 kb on - strand, within Shewana3_4352 at 238.277 kb on - strand, within Shewana3_4352 at 238.437 kb on - strand at 238.624 kb on + strand, within Shewana3_4353 at 238.669 kb on - strand, within Shewana3_4353 at 238.789 kb on - strand, within Shewana3_4353 at 238.791 kb on - strand, within Shewana3_4353 at 238.791 kb on - strand, within Shewana3_4353 at 238.824 kb on - strand, within Shewana3_4353 at 239.029 kb on - strand at 239.067 kb on - strand at 239.261 kb on + strand, within Shewana3_4354 at 239.373 kb on + strand, within Shewana3_4354 at 239.630 kb on - strand, within Shewana3_4354 at 239.688 kb on + strand, within Shewana3_4354 at 239.701 kb on + strand, within Shewana3_4354 at 239.739 kb on - strand, within Shewana3_4354 at 239.744 kb on + strand, within Shewana3_4354 at 239.767 kb on - strand, within Shewana3_4354 at 239.767 kb on - strand, within Shewana3_4354 at 239.859 kb on + strand, within Shewana3_4354 at 239.960 kb on + strand, within Shewana3_4354 at 240.038 kb on - strand, within Shewana3_4354 at 240.082 kb on - strand, within Shewana3_4354 at 240.149 kb on + strand, within Shewana3_4354 at 240.246 kb on + strand, within Shewana3_4354 at 240.284 kb on + strand, within Shewana3_4354 at 240.284 kb on - strand, within Shewana3_4354 at 240.415 kb on + strand, within Shewana3_4354 at 240.422 kb on - strand, within Shewana3_4354 at 240.533 kb on - strand at 240.713 kb on + strand at 240.713 kb on + strand at 240.845 kb on - strand, within Shewana3_4355 at 240.935 kb on - strand, within Shewana3_4355 at 240.950 kb on - strand, within Shewana3_4355 at 241.161 kb on + strand, within Shewana3_4355 at 241.252 kb on + strand, within Shewana3_4355 at 241.379 kb on - strand, within Shewana3_4355 at 241.485 kb on + strand, within Shewana3_4355 at 241.493 kb on - strand, within Shewana3_4355 at 241.494 kb on + strand, within Shewana3_4355 at 241.617 kb on - strand at 241.621 kb on - strand at 241.629 kb on - strand at 241.643 kb on + strand at 241.644 kb on + strand at 241.652 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 237,995 + Shewana3_4352 0.69 -0.2 238,003 - Shewana3_4352 0.69 -0.6 238,004 - Shewana3_4352 0.69 -1.6 238,041 + Shewana3_4352 0.72 -1.5 238,041 + Shewana3_4352 0.72 -1.8 238,041 + Shewana3_4352 0.72 +0.7 238,041 + Shewana3_4352 0.72 +0.5 238,049 - Shewana3_4352 0.72 -0.5 238,049 - Shewana3_4352 0.72 +0.2 238,117 - Shewana3_4352 0.76 +2.0 238,231 + Shewana3_4352 0.84 +0.1 238,231 + Shewana3_4352 0.84 +0.4 238,239 - Shewana3_4352 0.84 +0.5 238,239 - Shewana3_4352 0.84 -1.2 238,239 - Shewana3_4352 0.84 -1.2 238,269 + Shewana3_4352 0.86 +0.7 238,269 + Shewana3_4352 0.86 +1.2 238,269 + Shewana3_4352 0.86 +0.5 238,277 - Shewana3_4352 0.87 +0.2 238,277 - Shewana3_4352 0.87 -1.3 238,277 - Shewana3_4352 0.87 -0.2 238,277 - Shewana3_4352 0.87 +0.4 238,277 - Shewana3_4352 0.87 +1.4 238,437 - +0.2 238,624 + Shewana3_4353 0.37 +1.5 238,669 - Shewana3_4353 0.48 +0.1 238,789 - Shewana3_4353 0.79 +0.0 238,791 - Shewana3_4353 0.79 +0.7 238,791 - Shewana3_4353 0.79 +0.2 238,824 - Shewana3_4353 0.88 +0.1 239,029 - -1.3 239,067 - +0.4 239,261 + Shewana3_4354 0.18 -0.4 239,373 + Shewana3_4354 0.25 -0.6 239,630 - Shewana3_4354 0.39 -0.9 239,688 + Shewana3_4354 0.43 -0.3 239,701 + Shewana3_4354 0.44 +1.1 239,739 - Shewana3_4354 0.46 -0.3 239,744 + Shewana3_4354 0.46 +0.3 239,767 - Shewana3_4354 0.47 -1.3 239,767 - Shewana3_4354 0.47 -1.0 239,859 + Shewana3_4354 0.53 -0.6 239,960 + Shewana3_4354 0.59 -0.2 240,038 - Shewana3_4354 0.63 -1.4 240,082 - Shewana3_4354 0.66 -0.7 240,149 + Shewana3_4354 0.70 +0.2 240,246 + Shewana3_4354 0.75 +0.7 240,284 + Shewana3_4354 0.77 -0.9 240,284 - Shewana3_4354 0.77 +0.4 240,415 + Shewana3_4354 0.85 -0.3 240,422 - Shewana3_4354 0.85 -1.4 240,533 - -0.5 240,713 + +1.0 240,713 + +0.3 240,845 - Shewana3_4355 0.16 +0.4 240,935 - Shewana3_4355 0.25 -4.5 240,950 - Shewana3_4355 0.26 +0.4 241,161 + Shewana3_4355 0.47 +0.6 241,252 + Shewana3_4355 0.56 +0.3 241,379 - Shewana3_4355 0.68 -0.5 241,485 + Shewana3_4355 0.78 -1.0 241,493 - Shewana3_4355 0.79 -4.1 241,494 + Shewana3_4355 0.79 +0.1 241,617 - -1.3 241,621 - +0.8 241,629 - -1.3 241,643 + -2.4 241,644 + -1.0 241,652 - -1.5
Or see this region's nucleotide sequence