Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4189 and Shewana3_4190 are separated by 91 nucleotides Shewana3_4190 and Shewana3_4191 are separated by 71 nucleotides Shewana3_4191 and Shewana3_4192 are separated by 511 nucleotides
Shewana3_4189: Shewana3_4189 - hypothetical protein (RefSeq), at 53,496 to 54,005
_4189
Shewana3_4190: Shewana3_4190 - hypothetical protein (RefSeq), at 54,097 to 54,537
_4190
Shewana3_4191: Shewana3_4191 - ferredoxin (RefSeq), at 54,609 to 54,833
_4191
Shewana3_4192: Shewana3_4192 - hypothetical protein (RefSeq), at 55,345 to 55,773
_4192
Position (kb) 54
55 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 53.652 kb on - strand, within Shewana3_4189 at 53.812 kb on - strand, within Shewana3_4189 at 53.814 kb on + strand, within Shewana3_4189 at 53.815 kb on - strand, within Shewana3_4189 at 53.820 kb on - strand, within Shewana3_4189 at 53.822 kb on - strand, within Shewana3_4189 at 53.939 kb on - strand, within Shewana3_4189 at 53.953 kb on - strand, within Shewana3_4189 at 54.038 kb on + strand at 54.038 kb on + strand at 54.039 kb on + strand at 54.039 kb on + strand at 54.039 kb on + strand at 54.039 kb on + strand at 54.046 kb on - strand at 54.046 kb on - strand at 54.046 kb on - strand at 54.046 kb on - strand at 54.046 kb on - strand at 54.054 kb on + strand at 54.062 kb on - strand at 54.168 kb on - strand, within Shewana3_4190 at 54.189 kb on - strand, within Shewana3_4190 at 54.193 kb on - strand, within Shewana3_4190 at 54.240 kb on + strand, within Shewana3_4190 at 54.248 kb on - strand, within Shewana3_4190 at 54.267 kb on + strand, within Shewana3_4190 at 54.267 kb on + strand, within Shewana3_4190 at 54.275 kb on - strand, within Shewana3_4190 at 54.275 kb on - strand, within Shewana3_4190 at 54.282 kb on + strand, within Shewana3_4190 at 54.483 kb on + strand, within Shewana3_4190 at 54.483 kb on + strand, within Shewana3_4190 at 54.483 kb on + strand, within Shewana3_4190 at 54.546 kb on + strand at 54.547 kb on - strand at 54.598 kb on - strand at 54.663 kb on - strand, within Shewana3_4191 at 54.682 kb on + strand, within Shewana3_4191 at 54.714 kb on - strand, within Shewana3_4191 at 54.724 kb on - strand, within Shewana3_4191 at 54.842 kb on - strand at 54.872 kb on + strand at 54.938 kb on - strand at 55.342 kb on - strand at 55.381 kb on + strand at 55.404 kb on + strand, within Shewana3_4192 at 55.412 kb on - strand, within Shewana3_4192
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 53,652 - Shewana3_4189 0.31 -0.4 53,812 - Shewana3_4189 0.62 -1.1 53,814 + Shewana3_4189 0.62 +0.1 53,815 - Shewana3_4189 0.63 +0.3 53,820 - Shewana3_4189 0.64 -0.2 53,822 - Shewana3_4189 0.64 -0.5 53,939 - Shewana3_4189 0.87 +0.3 53,953 - Shewana3_4189 0.90 +1.5 54,038 + +0.5 54,038 + -0.5 54,039 + +1.2 54,039 + -4.4 54,039 + +0.4 54,039 + -1.9 54,046 - +0.5 54,046 - -3.7 54,046 - -0.3 54,046 - +0.1 54,046 - -0.1 54,054 + -0.4 54,062 - -0.1 54,168 - Shewana3_4190 0.16 -1.1 54,189 - Shewana3_4190 0.21 +0.2 54,193 - Shewana3_4190 0.22 +0.7 54,240 + Shewana3_4190 0.32 -1.2 54,248 - Shewana3_4190 0.34 +0.2 54,267 + Shewana3_4190 0.39 -1.3 54,267 + Shewana3_4190 0.39 +0.9 54,275 - Shewana3_4190 0.40 -0.4 54,275 - Shewana3_4190 0.40 -0.7 54,282 + Shewana3_4190 0.42 +0.6 54,483 + Shewana3_4190 0.88 -0.9 54,483 + Shewana3_4190 0.88 -0.7 54,483 + Shewana3_4190 0.88 +0.2 54,546 + -1.0 54,547 - +0.9 54,598 - +0.3 54,663 - Shewana3_4191 0.24 +0.5 54,682 + Shewana3_4191 0.32 +0.1 54,714 - Shewana3_4191 0.47 +0.9 54,724 - Shewana3_4191 0.51 +0.9 54,842 - -0.8 54,872 + +0.4 54,938 - +0.4 55,342 - -1.4 55,381 + +0.4 55,404 + Shewana3_4192 0.14 +0.4 55,412 - Shewana3_4192 0.16 +0.8
Or see this region's nucleotide sequence