Strain Fitness in Shewanella amazonensis SB2B around Sama_3282

Experiment: acetate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate
3,898,079	-		Sama_3281	0.70	-0.0
3,898,086	+		Sama_3281	0.70	-3.4
3,898,087	-		Sama_3281	0.70	-0.4
3,898,188	+		Sama_3281	0.76	-2.6
3,898,189	-		Sama_3281	0.76	-0.0
3,898,189	-		Sama_3281	0.76	+0.2
3,898,189	-		Sama_3281	0.76	-2.0
3,898,189	-		Sama_3281	0.76	+0.1
3,898,218	+		Sama_3281	0.78	-0.8
3,898,219	-		Sama_3281	0.78	-1.7
3,898,219	-		Sama_3281	0.78	-1.7
3,898,219	-		Sama_3281	0.78	-0.6
3,898,219	-		Sama_3281	0.78	-1.2
3,898,225	+		Sama_3281	0.79	-1.6
3,898,225	+		Sama_3281	0.79	-2.6
3,898,225	+		Sama_3281	0.79	-0.8
3,898,225	+		Sama_3281	0.79	-1.4
3,898,225	+		Sama_3281	0.79	-2.3
3,898,226	-		Sama_3281	0.79	-1.6
3,898,226	-		Sama_3281	0.79	-1.1
3,898,226	-		Sama_3281	0.79	-1.1
3,898,226	-		Sama_3281	0.79	-2.1
3,898,226	-		Sama_3281	0.79	+0.4
3,898,226	-		Sama_3281	0.79	-0.6
3,898,226	-		Sama_3281	0.79	-0.4
3,898,226	-		Sama_3281	0.79	-0.7
3,898,226	-		Sama_3281	0.79	+0.2
3,898,397	+		Sama_3281	0.89	-2.8
3,898,397	+		Sama_3281	0.89	-2.6
3,898,397	+		Sama_3281	0.89	-2.0
3,898,475	+				-2.6
3,898,475	+				-1.1
3,898,475	+				-2.8
3,898,475	+				-1.1
3,898,475	+				-2.5
3,898,475	+				-0.4
3,898,476	-				-1.8
3,898,476	-				-0.9
3,898,476	-				-0.1
3,898,538	-				-1.8
3,898,538	-				-1.4
3,898,604	+				-2.8
3,898,604	+				-1.0
3,898,604	+				-0.0
3,898,604	+				-0.4
3,898,604	+				-0.8
3,898,605	-				+1.2
3,898,605	-				-0.4
3,898,609	+				-1.6
3,898,609	+				-1.6
3,898,610	-				-0.2
3,898,688	+				-0.4
3,898,688	+				-1.3
3,898,688	+				-1.8
3,898,688	+				-2.3
3,898,689	-				-2.2
3,898,689	-				-0.8
3,898,689	-				-1.3
3,898,689	-				-0.7
3,898,728	+				-2.6
3,898,728	+				-2.2
3,898,729	-				-0.1
3,898,729	-				-1.1
3,898,729	-				-1.1
3,898,729	-				-1.4
3,898,729	-				-0.4
3,898,729	-				-0.7
3,898,731	+				+0.2
3,898,731	+				-1.0
3,898,731	+				-0.8
3,898,731	+				-1.6
3,898,731	+				-2.2
3,898,744	-				-1.7
3,898,746	+				-1.6
3,898,746	+				-1.4
3,898,747	-				-0.8
3,898,747	-				-0.8
3,898,747	-				+0.4
3,898,776	+				-1.6
3,898,776	+				-2.4
3,898,798	+				-2.8
3,898,798	+				-2.6
3,898,798	+				-1.7
3,898,798	+				-2.7
3,898,798	+				-3.1
3,898,799	-				+0.9
3,898,799	-				-0.4
3,898,799	-				-0.8
3,898,801	+				-2.0
3,898,801	+				-0.7
3,898,801	+				+1.2
3,898,802	-				-0.8
3,898,802	-				-1.1
3,898,802	-				-1.0
3,898,802	-				-0.1
3,898,802	-				-1.1
3,898,846	+				-0.4
3,898,847	-				-0.7
3,898,853	+				-2.2
3,898,854	-				+0.8
3,898,875	-				-0.9
3,898,948	+				+0.6
3,898,949	-				-0.2
3,898,999	+				-0.3
3,898,999	+				-0.5
3,899,000	-				+0.3
3,899,000	-				+1.2
3,899,020	+				+0.8
3,899,021	-				+0.4
3,899,021	-				-1.1
3,899,080	+				+0.0
3,899,081	-				+0.3
3,899,116	+				-2.8
3,899,116	+				-2.0
3,899,116	+				-3.3
3,899,117	-				-3.0
3,899,117	-				-1.8
3,899,233	+		Sama_3282	0.10	-2.8
3,899,234	-		Sama_3282	0.10	-3.6
3,899,234	-		Sama_3282	0.10	-1.4
3,899,257	+		Sama_3282	0.12	-3.1
3,899,257	+		Sama_3282	0.12	-1.1
3,899,257	+		Sama_3282	0.12	-1.8
3,899,258	-		Sama_3282	0.12	-2.9
3,899,258	-		Sama_3282	0.12	-3.5
3,899,258	-		Sama_3282	0.12	-3.7
3,899,274	+		Sama_3282	0.13	-3.7
3,899,275	-		Sama_3282	0.13	-3.4
3,899,275	-		Sama_3282	0.13	-2.5
3,899,296	+		Sama_3282	0.15	-4.5
3,899,297	-		Sama_3282	0.15	-2.5
3,899,297	-		Sama_3282	0.15	-3.3
3,899,297	-		Sama_3282	0.15	-1.1
3,899,297	-		Sama_3282	0.15	-0.8
3,899,297	-		Sama_3282	0.15	-2.1
3,899,297	-		Sama_3282	0.15	-3.7
3,899,297	-		Sama_3282	0.15	-4.1
3,899,305	+		Sama_3282	0.15	-1.4
3,899,341	+		Sama_3282	0.18	-2.4
3,899,341	+		Sama_3282	0.18	-1.1
3,899,341	+		Sama_3282	0.18	-4.3
3,899,342	-		Sama_3282	0.18	-2.0
3,899,342	-		Sama_3282	0.18	-0.6
3,899,351	+		Sama_3282	0.18	-4.5
3,899,398	+		Sama_3282	0.22	-4.0
3,899,398	+		Sama_3282	0.22	-3.0
3,899,398	+		Sama_3282	0.22	-2.5
3,899,401	+		Sama_3282	0.22	-3.4
3,899,401	+		Sama_3282	0.22	-3.6
3,899,402	-		Sama_3282	0.22	-3.7
3,899,500	+		Sama_3282	0.28	-3.8
3,899,500	+		Sama_3282	0.28	-4.4
3,899,500	+		Sama_3282	0.28	-2.8
3,899,500	+		Sama_3282	0.28	-3.1
3,899,500	+		Sama_3282	0.28	-0.7
3,899,500	+		Sama_3282	0.28	-2.4
3,899,501	-		Sama_3282	0.28	-2.0
3,899,501	-		Sama_3282	0.28	-2.9
3,899,501	-		Sama_3282	0.28	-0.4
3,899,501	-		Sama_3282	0.28	-1.3
3,899,501	-		Sama_3282	0.28	-1.4
3,899,699	+		Sama_3282	0.42	-3.5
3,899,699	+		Sama_3282	0.42	-2.6
3,899,711	+		Sama_3282	0.43	-2.6
3,899,711	+		Sama_3282	0.43	-1.0
3,899,744	+		Sama_3282	0.45	-3.1
3,899,744	+		Sama_3282	0.45	-2.6
3,899,744	+		Sama_3282	0.45	-2.3
3,899,745	-		Sama_3282	0.45	-3.1
3,899,745	-		Sama_3282	0.45	-2.8
3,899,745	-		Sama_3282	0.45	-2.0
3,899,815	+		Sama_3282	0.50	-2.8
3,899,919	+		Sama_3282	0.57	-3.1
3,899,920	-		Sama_3282	0.57	-4.3
3,899,943	+		Sama_3282	0.58	+0.2
3,899,943	+		Sama_3282	0.58	-3.5
3,899,943	+		Sama_3282	0.58	-3.5
3,899,943	+		Sama_3282	0.58	-4.0
3,899,943	+		Sama_3282	0.58	-1.6
3,899,943	+		Sama_3282	0.58	-3.4
3,899,944	-		Sama_3282	0.58	-2.1
3,899,944	-		Sama_3282	0.58	-3.4
3,899,944	-		Sama_3282	0.58	-1.1
3,899,944	-		Sama_3282	0.58	-0.4
3,899,944	-		Sama_3282	0.58	-4.4
3,899,944	-		Sama_3282	0.58	-1.6
3,899,944	-		Sama_3282	0.58	-2.7
3,899,944	-		Sama_3282	0.58	-2.7
3,899,944	-		Sama_3282	0.58	-3.6
3,899,944	-		Sama_3282	0.58	-3.2
3,899,946	+		Sama_3282	0.59	-1.8
3,899,947	-		Sama_3282	0.59	-2.2
3,899,947	-		Sama_3282	0.59	-2.0
3,899,981	-		Sama_3282	0.61	-3.0
3,899,981	-		Sama_3282	0.61	-1.8
3,899,997	+		Sama_3282	0.62	-2.9
3,899,997	+		Sama_3282	0.62	-2.5
3,899,998	-		Sama_3282	0.62	-2.9
3,900,048	+		Sama_3282	0.65	-2.0
3,900,048	+		Sama_3282	0.65	-4.0
3,900,048	+		Sama_3282	0.65	-3.4
3,900,049	-		Sama_3282	0.65	-2.8
3,900,067	+		Sama_3282	0.67	-1.4
3,900,067	+		Sama_3282	0.67	-1.4
3,900,067	+		Sama_3282	0.67	-1.1
3,900,068	-		Sama_3282	0.67	-1.4
3,900,068	-		Sama_3282	0.67	-3.2
3,900,123	-		Sama_3282	0.70	-2.9
3,900,153	+		Sama_3282	0.72	-4.2
3,900,153	+		Sama_3282	0.72	-1.4
3,900,153	+		Sama_3282	0.72	-0.0
3,900,153	+		Sama_3282	0.72	-3.0
3,900,153	+		Sama_3282	0.72	-1.1
3,900,153	+		Sama_3282	0.72	-2.5
3,900,153	+		Sama_3282	0.72	-1.1
3,900,153	+		Sama_3282	0.72	-3.0
3,900,153	+		Sama_3282	0.72	-1.4
3,900,153	+		Sama_3282	0.72	-2.1
3,900,154	-		Sama_3282	0.73	-2.0
3,900,154	-		Sama_3282	0.73	-2.4
3,900,154	-		Sama_3282	0.73	-0.4
3,900,154	-		Sama_3282	0.73	-0.8
3,900,172	+		Sama_3282	0.74	-3.5
3,900,172	+		Sama_3282	0.74	-3.3
3,900,173	-		Sama_3282	0.74	-0.8
3,900,173	-		Sama_3282	0.74	-1.8
3,900,173	-		Sama_3282	0.74	-1.1
3,900,207	+		Sama_3282	0.76	-4.0
3,900,208	-		Sama_3282	0.76	-3.1
3,900,256	-		Sama_3282	0.79	-3.6
3,900,256	-		Sama_3282	0.79	-3.7
3,900,290	+		Sama_3282	0.82	-3.8
3,900,290	+		Sama_3282	0.82	-1.3
3,900,291	-		Sama_3282	0.82	-2.8
3,900,291	-		Sama_3282	0.82	-4.1
3,900,294	+		Sama_3282	0.82	-2.8
3,900,295	-		Sama_3282	0.82	-2.9
3,900,295	-		Sama_3282	0.82	-1.4
3,900,295	-		Sama_3282	0.82	-1.8
3,900,299	+		Sama_3282	0.82	-3.2
3,900,367	+		Sama_3282	0.87	-3.1
3,900,367	+		Sama_3282	0.87	-4.3
3,900,368	-		Sama_3282	0.87	-3.1
3,900,368	-		Sama_3282	0.87	-1.6
3,900,368	-		Sama_3282	0.87	-5.3
3,900,374	+		Sama_3282	0.87	-4.0
3,900,375	-		Sama_3282	0.87	-1.8
3,900,375	-		Sama_3282	0.87	-2.1
3,900,375	-		Sama_3282	0.87	-3.5
3,900,375	-		Sama_3282	0.87	-1.1
3,900,375	-		Sama_3282	0.87	-2.7
3,900,375	-		Sama_3282	0.87	-1.8
3,900,460	+				-1.4
3,900,460	+				-2.7
3,900,461	-				-3.0
3,900,461	-				-2.4
3,900,545	+				-2.9
3,900,550	+				-3.0
3,900,551	-				-1.6
3,900,554	+				-1.0
3,900,561	-				-2.7
3,900,567	+				+0.2
3,900,568	-				-2.6
3,900,574	+				-2.3
3,900,574	+				-3.3
3,900,574	+				-2.5
3,900,575	-				-0.5
3,900,575	-				+0.7
3,900,575	-				-2.1
3,900,575	-				-2.6
3,900,613	+				-2.6
3,900,613	+				-0.4
3,900,614	-				-0.8
3,900,614	-				-1.5
3,900,616	+				-2.5
3,900,617	-				-2.0
3,900,617	-				-0.3
3,900,617	-				-0.9
3,900,617	-				-1.1
3,900,617	-				-0.9
3,900,617	-				+0.1
3,900,647	+				-2.9
3,900,647	+				-1.8
3,900,647	+				-3.6
3,900,647	+				+0.2
3,900,648	-				-0.4
3,900,648	-				-0.8
3,900,659	-				-0.0
3,900,659	-				-3.1
3,900,748	+				+0.6
3,900,748	+				-1.5
3,900,748	+				+0.9
3,900,748	+				+2.2
3,900,748	+				+1.2
3,900,748	+				-0.1
3,900,748	+				+1.2
3,900,748	+				-0.1
3,900,748	+				+0.5
3,900,748	+				-0.6
3,900,748	+				-1.7
3,900,749	-				-3.2
3,900,749	-				-1.1
3,900,749	-				-1.3
3,900,749	-				-1.1
3,900,749	-				+0.4
3,900,749	-				-0.8
3,900,749	-				-3.0
3,900,752	+				-2.9
3,900,752	+				-2.5
3,900,752	+				-0.1
3,900,753	-				-2.5
3,900,753	-				-2.2
3,900,753	-				-2.2
3,900,753	-				-2.6
3,900,753	-				-2.8
3,900,753	-				-3.4
3,900,781	+				-4.8
3,900,781	+				-0.1
3,900,782	-				-2.0
3,900,782	-				-2.0
3,900,792	+				-1.9
3,900,793	-				+0.2
3,900,793	-				-1.5
3,900,793	-				-0.4
3,900,805	-				-1.6
3,900,870	+		Sama_3283	0.11	-1.6
3,900,870	+		Sama_3283	0.11	-2.9
3,900,871	-		Sama_3283	0.11	-2.5
3,900,985	+		Sama_3283	0.24	-2.6
3,900,985	+		Sama_3283	0.24	-1.8
3,900,985	+		Sama_3283	0.24	-1.6
3,900,986	-		Sama_3283	0.24	-1.8
3,900,986	-		Sama_3283	0.24	-0.8
3,900,986	-		Sama_3283	0.24	-2.8
3,900,986	-		Sama_3283	0.24	-2.6
3,900,986	-		Sama_3283	0.24	-0.4
3,900,994	+		Sama_3283	0.25	-1.5
3,900,994	+		Sama_3283	0.25	-2.1
3,900,994	+		Sama_3283	0.25	-2.1
3,900,994	+		Sama_3283	0.25	+0.4
3,900,994	+		Sama_3283	0.25	-2.0
3,900,994	+		Sama_3283	0.25	-0.8
3,900,995	-		Sama_3283	0.25	-1.6
3,900,995	-		Sama_3283	0.25	-1.4
3,900,995	-		Sama_3283	0.25	-2.0
3,900,995	-		Sama_3283	0.25	-1.6
3,900,995	-		Sama_3283	0.25	-0.4
3,901,011	+		Sama_3283	0.27	-1.4
3,901,011	+		Sama_3283	0.27	-2.3
3,901,062	-		Sama_3283	0.33	-1.5
3,901,062	-		Sama_3283	0.33	-0.6
3,901,062	-		Sama_3283	0.33	-2.0
3,901,082	+		Sama_3283	0.35	-3.0
3,901,082	+		Sama_3283	0.35	-2.8
3,901,082	+		Sama_3283	0.35	-1.4
3,901,082	+		Sama_3283	0.35	-3.3
3,901,083	-		Sama_3283	0.35	-1.1
3,901,083	-		Sama_3283	0.35	-1.6
3,901,276	+		Sama_3283	0.57	-4.0
3,901,354	+		Sama_3283	0.66	-4.1
3,901,355	-		Sama_3283	0.66	-1.6
3,901,428	+		Sama_3283	0.74	-2.3
3,901,428	+		Sama_3283	0.74	-3.1
3,901,428	+		Sama_3283	0.74	-1.3
3,901,428	+		Sama_3283	0.74	-1.8
3,901,428	+		Sama_3283	0.74	-1.4
3,901,428	+		Sama_3283	0.74	-0.8
3,901,428	+		Sama_3283	0.74	-1.2
3,901,428	+		Sama_3283	0.74	-1.9
3,901,429	-		Sama_3283	0.74	-2.0
3,901,429	-		Sama_3283	0.74	-2.0
3,901,429	-		Sama_3283	0.74	-2.0
3,901,429	-		Sama_3283	0.74	-2.6
3,901,429	-		Sama_3283	0.74	-1.9
3,901,429	-		Sama_3283	0.74	-1.4
3,901,429	-		Sama_3283	0.74	-2.4
3,901,429	-		Sama_3283	0.74	-0.1
3,901,429	-		Sama_3283	0.74	-1.4
3,901,429	-		Sama_3283	0.74	-1.1
3,901,429	-		Sama_3283	0.74	-0.4
3,901,429	-		Sama_3283	0.74	-3.3
3,901,429	-		Sama_3283	0.74	-2.7
3,901,429	-		Sama_3283	0.74	-1.9
3,901,430	+		Sama_3283	0.74	-1.4
3,901,430	+		Sama_3283	0.74	-1.6
3,901,430	+		Sama_3283	0.74	-3.4
3,901,431	-		Sama_3283	0.75	-1.8
3,901,431	-		Sama_3283	0.75	-4.4
3,901,431	-		Sama_3283	0.75	-0.4
3,901,431	-		Sama_3283	0.75	-2.3
3,901,431	-		Sama_3283	0.75	-1.6
3,901,431	-		Sama_3283	0.75	-1.1
3,901,431	-		Sama_3283	0.75	-2.3
3,901,459	+		Sama_3283	0.78	-1.1
3,901,459	+		Sama_3283	0.78	-2.1
3,901,460	-		Sama_3283	0.78	-3.0
3,901,460	-		Sama_3283	0.78	-0.8
3,901,492	+		Sama_3283	0.81	-1.0
3,901,492	+		Sama_3283	0.81	-2.3
3,901,492	+		Sama_3283	0.81	-1.6
3,901,492	+		Sama_3283	0.81	-0.7
3,901,493	-		Sama_3283	0.82	-2.3
3,901,546	+		Sama_3283	0.88	+0.2
3,901,546	+		Sama_3283	0.88	-1.3
3,901,547	-		Sama_3283	0.88	+0.2
3,901,547	-		Sama_3283	0.88	-1.7