Strain Fitness in Shewanella amazonensis SB2B around Sama_3270

Experiment: acetate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate
3,883,957	+		Sama_3269	0.79	-0.3
3,883,957	+		Sama_3269	0.79	+1.2
3,883,957	+		Sama_3269	0.79	+0.3
3,883,957	+		Sama_3269	0.79	-0.2
3,883,957	+		Sama_3269	0.79	-1.0
3,883,958	-		Sama_3269	0.79	-0.2
3,883,958	-		Sama_3269	0.79	+1.3
3,883,958	-		Sama_3269	0.79	-0.2
3,883,979	+		Sama_3269	0.80	-0.7
3,884,013	+		Sama_3269	0.81	+0.7
3,884,013	+		Sama_3269	0.81	-1.6
3,884,014	-		Sama_3269	0.81	-0.3
3,884,014	-		Sama_3269	0.81	-0.2
3,884,019	+		Sama_3269	0.81	+0.2
3,884,019	+		Sama_3269	0.81	+0.7
3,884,020	-		Sama_3269	0.81	+0.2
3,884,020	-		Sama_3269	0.81	+0.2
3,884,020	-		Sama_3269	0.81	-1.0
3,884,020	-		Sama_3269	0.81	-0.2
3,884,020	-		Sama_3269	0.81	+1.0
3,884,071	-		Sama_3269	0.83	+0.4
3,884,158	+		Sama_3269	0.86	-1.6
3,884,158	+		Sama_3269	0.86	+1.2
3,884,159	-		Sama_3269	0.86	-1.7
3,884,159	-		Sama_3269	0.86	-0.1
3,884,159	-		Sama_3269	0.86	-0.3
3,884,159	-		Sama_3269	0.86	-0.5
3,884,175	-		Sama_3269	0.86	+1.0
3,884,175	-		Sama_3269	0.86	+1.6
3,884,175	-		Sama_3269	0.86	+0.4
3,884,175	-		Sama_3269	0.86	+0.2
3,884,238	+		Sama_3269	0.88	-1.2
3,884,238	+		Sama_3269	0.88	+0.7
3,884,238	+		Sama_3269	0.88	-0.0
3,884,239	-		Sama_3269	0.88	-0.4
3,884,239	-		Sama_3269	0.88	-0.3
3,884,239	-		Sama_3269	0.88	-0.2
3,884,239	-		Sama_3269	0.88	+1.0
3,884,239	-		Sama_3269	0.88	-0.2
3,884,239	-		Sama_3269	0.88	+1.0
3,884,241	-		Sama_3269	0.88	+1.2
3,884,241	-		Sama_3269	0.88	-0.1
3,884,273	+		Sama_3269	0.89	-0.4
3,884,273	+		Sama_3269	0.89	-1.2
3,884,273	+		Sama_3269	0.89	+0.7
3,884,273	+		Sama_3269	0.89	+0.2
3,884,305	+				-0.6
3,884,334	-				-1.3
3,884,420	+				-0.1
3,884,420	+				-0.8
3,884,420	+				+0.5
3,884,470	+				+0.6
3,884,470	+				-1.1
3,884,470	+				-0.2
3,884,470	+				-1.6
3,884,470	+				+0.9
3,884,470	+				+0.9
3,884,470	+				+0.8
3,884,470	+				+0.2
3,884,470	+				-0.1
3,884,471	-				-0.8
3,884,471	-				+0.9
3,884,471	-				-0.5
3,884,471	-				+0.1
3,884,500	+				+0.6
3,884,500	+				+2.2
3,884,500	+				+0.7
3,884,500	+				-0.0
3,884,500	+				-0.8
3,884,501	-				-1.3
3,884,538	+				-0.4
3,884,539	-				-0.3
3,884,561	+				-0.5
3,884,598	+				+1.2
3,884,598	+				-0.4
3,884,599	-				-0.9
3,884,599	-				+2.6
3,884,599	-				+2.4
3,884,678	+				+0.1
3,884,678	+				-0.2
3,884,678	+				+3.2
3,884,678	+				+0.9
3,884,679	-				+0.1
3,884,679	-				-0.3
3,884,679	-				+0.0
3,884,679	-				-1.3
3,884,679	-				-0.0
3,884,679	-				+0.6
3,884,682	+				+0.8
3,884,682	+				-0.0
3,884,682	+				+0.2
3,884,682	+				-0.5
3,884,682	+				+1.6
3,884,682	+				+0.2
3,884,682	+				+0.9
3,884,682	+				-0.8
3,884,682	+				+0.8
3,884,683	-				-0.3
3,884,683	-				+0.5
3,884,683	-				+0.2
3,884,683	-				-1.3
3,884,683	-				+0.6
3,884,683	-				-0.6
3,884,683	-				+0.6
3,884,683	-				+1.6
3,884,683	-				+0.4
3,884,683	-				-1.2
3,884,702	+				-0.1
3,884,732	+				+0.8
3,884,733	-				-0.5
3,884,733	-				+0.2
3,884,733	-				-0.2
3,884,735	+				-0.1
3,884,735	+				-0.1
3,884,735	+				-0.0
3,884,735	+				+0.4
3,884,735	+				+0.2
3,884,735	+				-0.5
3,884,735	+				-1.2
3,884,735	+				+1.2
3,884,735	+				+0.4
3,884,735	+				-0.0
3,884,735	+				-0.6
3,884,735	+				+0.6
3,884,735	+				+1.2
3,884,735	+				+0.2
3,884,735	+				+2.2
3,884,735	+				+0.0
3,884,735	+				-0.6
3,884,735	+				-0.2
3,884,735	+				+0.4
3,884,735	+				+0.6
3,884,736	-				+1.6
3,884,736	-				+0.2
3,884,736	-				-0.1
3,884,736	-				-0.7
3,884,736	-				-1.1
3,884,736	-				+0.7
3,884,736	-				-1.3
3,884,736	-				-0.3
3,884,736	-				-0.0
3,884,736	-				+0.3
3,884,736	-				-0.1
3,884,736	-				+0.2
3,884,736	-				-0.3
3,884,736	-				+0.5
3,884,736	-				-2.2
3,884,736	-				+0.2
3,884,736	-				+0.7
3,884,736	-				+0.4
3,884,738	+				+0.2
3,884,738	+				+0.4
3,884,738	+				+0.2
3,884,738	+				+0.1
3,884,738	+				-0.0
3,884,738	+				-0.1
3,884,738	+				+0.4
3,884,739	-				+0.2
3,884,739	-				-1.0
3,884,739	-				+1.0
3,884,739	-				-0.5
3,884,739	-				+0.3
3,884,739	-				-0.1
3,884,739	-				+1.1
3,884,739	-				+1.2
3,884,752	+				+0.7
3,884,752	+				-1.6
3,884,752	+				-1.8
3,884,752	+				+0.9
3,884,752	+				+0.5
3,884,753	-				-1.0
3,884,753	-				+1.0
3,884,753	-				-1.0
3,884,753	-				+0.2
3,884,753	-				-0.6
3,884,753	-				-0.4
3,884,859	+				+1.1
3,884,859	+				+0.7
3,884,859	+				+0.9
3,884,860	-				+0.6
3,884,860	-				+0.6
3,884,860	-				-0.0
3,884,860	-				+0.2
3,884,860	-				+0.5
3,884,862	+				+0.2
3,884,862	+				+0.1
3,884,862	+				+0.4
3,884,862	+				-0.2
3,884,862	+				+0.1
3,884,863	-				-1.1
3,884,863	-				+0.4
3,884,863	-				-2.0
3,884,863	-				+0.7
3,884,863	-				-0.6
3,884,883	+				+0.3
3,884,883	+				-0.3
3,884,884	-				-1.0
3,884,884	-				+0.6
3,884,884	-				+0.4
3,884,884	-				+1.0
3,884,884	-				+0.4
3,884,884	-				-1.2
3,884,904	-				-2.3
3,884,975	+				+0.7
3,884,975	+				+0.6
3,884,975	+				-0.1
3,884,975	+				-0.8
3,884,975	+				+0.5
3,884,975	+				+0.4
3,884,975	+				+1.2
3,884,975	+				-1.3
3,884,976	-				-0.3
3,884,976	-				+0.0
3,884,976	-				+0.5
3,884,976	-				-1.3
3,884,994	+				-0.7
3,884,994	+				-1.5
3,884,994	+				-0.5
3,884,994	+				+0.4
3,884,995	-				+1.2
3,885,021	+				+0.1
3,885,021	+				+0.7
3,885,021	+				-0.2
3,885,022	-				-1.0
3,885,022	-				+1.3
3,885,022	-				-0.1
3,885,022	-				+1.3
3,885,127	+		Sama_3270	0.12	-1.2
3,885,172	+		Sama_3270	0.14	-0.2
3,885,172	+		Sama_3270	0.14	-0.2
3,885,173	-		Sama_3270	0.14	+0.8
3,885,173	-		Sama_3270	0.14	+0.3
3,885,299	-		Sama_3270	0.20	+0.1
3,885,299	-		Sama_3270	0.20	-0.4
3,885,299	-		Sama_3270	0.20	+0.4
3,885,299	-		Sama_3270	0.20	+0.6
3,885,352	+		Sama_3270	0.22	+0.7
3,885,352	+		Sama_3270	0.22	-0.6
3,885,352	+		Sama_3270	0.22	+0.8
3,885,353	-		Sama_3270	0.22	-0.2
3,885,428	-		Sama_3270	0.25	+0.7
3,885,428	-		Sama_3270	0.25	-0.4
3,885,428	-		Sama_3270	0.25	-1.0
3,885,428	-		Sama_3270	0.25	-0.8
3,885,481	+		Sama_3270	0.28	+0.1
3,885,538	+		Sama_3270	0.31	-0.6
3,885,539	-		Sama_3270	0.31	-0.9
3,885,539	-		Sama_3270	0.31	-1.0
3,885,594	+		Sama_3270	0.33	+0.4
3,885,594	+		Sama_3270	0.33	-0.4
3,885,595	-		Sama_3270	0.33	-0.4
3,885,664	-		Sama_3270	0.36	-1.1
3,885,690	+		Sama_3270	0.38	+0.6
3,885,691	-		Sama_3270	0.38	-1.1
3,885,776	+		Sama_3270	0.42	-0.8
3,885,776	+		Sama_3270	0.42	-0.1
3,885,847	+		Sama_3270	0.45	-1.0
3,885,868	+		Sama_3270	0.46	-1.2
3,885,868	+		Sama_3270	0.46	-0.1
3,885,869	-		Sama_3270	0.46	-0.1
3,885,869	-		Sama_3270	0.46	-0.1
3,886,024	+		Sama_3270	0.53	+0.2
3,886,064	-		Sama_3270	0.55	-0.6
3,886,064	-		Sama_3270	0.55	-1.0
3,886,064	-		Sama_3270	0.55	+0.4
3,886,133	-		Sama_3270	0.58	+0.5
3,886,133	-		Sama_3270	0.58	+1.7
3,886,191	+		Sama_3270	0.61	-0.1
3,886,201	+		Sama_3270	0.61	+0.4
3,886,201	+		Sama_3270	0.61	+2.0
3,886,202	-		Sama_3270	0.61	-0.4
3,886,202	-		Sama_3270	0.61	+0.3
3,886,202	-		Sama_3270	0.61	+0.4
3,886,202	-		Sama_3270	0.61	-1.4
3,886,218	+		Sama_3270	0.62	+1.0
3,886,218	+		Sama_3270	0.62	+0.3
3,886,291	+		Sama_3270	0.66	+0.8
3,886,291	+		Sama_3270	0.66	-0.3
3,886,291	+		Sama_3270	0.66	+0.1
3,886,293	+		Sama_3270	0.66	+0.2
3,886,305	+		Sama_3270	0.66	-0.2
3,886,306	-		Sama_3270	0.66	-0.8
3,886,404	+		Sama_3270	0.71	+0.2
3,886,404	+		Sama_3270	0.71	+0.7
3,886,405	-		Sama_3270	0.71	+0.7
3,886,518	+		Sama_3270	0.76	-0.7
3,886,518	+		Sama_3270	0.76	-0.4
3,886,518	+		Sama_3270	0.76	+0.3
3,886,602	+		Sama_3270	0.80	-0.2
3,886,603	-		Sama_3270	0.80	-0.1
3,886,779	+		Sama_3270	0.88	+0.4
3,886,780	-		Sama_3270	0.88	+2.2
3,886,843	+				-0.6
3,886,843	+				+0.7
3,886,843	+				-0.4
3,886,843	+				+1.5
3,886,844	-				+0.2
3,886,844	-				+0.5
3,886,844	-				-1.2
3,886,844	-				+0.2
3,886,844	-				+0.2
3,886,844	-				-1.2
3,886,922	+				-0.5
3,886,923	-				+1.0
3,886,934	-				-0.2
3,886,942	+				+0.8
3,886,942	+				-0.5
3,886,942	+				-0.3
3,886,942	+				-0.3
3,886,942	+				-0.3
3,886,942	+				+2.2
3,886,943	-				+0.5
3,886,943	-				-1.4
3,886,943	-				+0.9
3,886,943	-				+0.7
3,886,943	-				-0.6
3,886,945	+				-1.3
3,886,945	+				+0.7
3,886,945	+				+0.5
3,886,945	+				+2.0
3,886,946	-				-0.1
3,886,946	-				-0.4
3,886,946	-				+1.4
3,886,946	-				-1.8
3,886,946	-				-0.2
3,887,033	-				+1.6
3,887,033	-				-0.5
3,887,033	-				+0.4
3,887,071	-				-0.4
3,887,090	+				+0.3
3,887,090	+				+1.4
3,887,090	+				-0.1
3,887,090	+				+0.7
3,887,091	-				+0.9
3,887,091	-				-0.1
3,887,091	-				+0.8
3,887,091	-				-0.3
3,887,091	-				-0.5
3,887,429	-				-0.1
3,887,475	-				-0.5
3,887,486	+				+0.9
3,887,487	-				-0.4
3,887,506	+				-0.7
3,887,506	+				-0.7
3,887,521	-				-0.2
3,887,590	+		Sama_3272	0.18	+0.5
3,887,591	-		Sama_3272	0.18	-2.4
3,887,591	-		Sama_3272	0.18	-0.8
3,887,602	+		Sama_3272	0.20	+1.0
3,887,602	+		Sama_3272	0.20	+1.0
3,887,602	+		Sama_3272	0.20	-0.2
3,887,602	+		Sama_3272	0.20	-2.2
3,887,603	-		Sama_3272	0.20	+0.2
3,887,603	-		Sama_3272	0.20	-1.6
3,887,603	-		Sama_3272	0.20	+0.2
3,887,603	-		Sama_3272	0.20	+0.2
3,887,603	-		Sama_3272	0.20	-0.5
3,887,603	-		Sama_3272	0.20	-0.5
3,887,611	-		Sama_3272	0.22	-0.4
3,887,617	+		Sama_3272	0.23	+0.5
3,887,617	+		Sama_3272	0.23	+0.9
3,887,617	+		Sama_3272	0.23	-0.0
3,887,618	-		Sama_3272	0.23	-0.4
3,887,618	-		Sama_3272	0.23	+0.1
3,887,618	-		Sama_3272	0.23	-1.3
3,887,622	+		Sama_3272	0.23	+0.4
3,887,622	+		Sama_3272	0.23	-0.4
3,887,622	+		Sama_3272	0.23	-0.3
3,887,622	+		Sama_3272	0.23	-1.8
3,887,622	+		Sama_3272	0.23	-0.4
3,887,623	-		Sama_3272	0.24	-0.0
3,887,623	-		Sama_3272	0.24	-0.4
3,887,623	-		Sama_3272	0.24	+0.2
3,887,623	-		Sama_3272	0.24	-3.3
3,887,638	-		Sama_3272	0.26	-0.8
3,887,651	+		Sama_3272	0.28	+0.7
3,887,685	+		Sama_3272	0.34	+0.7
3,887,685	+		Sama_3272	0.34	+0.5
3,887,707	+		Sama_3272	0.38	-0.1
3,887,708	-		Sama_3272	0.38	+0.2
3,887,716	+		Sama_3272	0.39	+0.0
3,887,716	+		Sama_3272	0.39	+0.9
3,887,716	+		Sama_3272	0.39	-1.6
3,887,716	+		Sama_3272	0.39	+0.2
3,887,716	+		Sama_3272	0.39	-1.8
3,887,717	-		Sama_3272	0.40	+1.4
3,887,717	-		Sama_3272	0.40	-0.6
3,887,717	-		Sama_3272	0.40	+1.0
3,887,761	-		Sama_3272	0.47	+0.2
3,887,761	-		Sama_3272	0.47	-1.8
3,887,837	-		Sama_3272	0.60	+0.7
3,887,838	+		Sama_3272	0.60	+1.0
3,887,838	+		Sama_3272	0.60	-0.1
3,887,839	-		Sama_3272	0.61	+0.0
3,887,839	-		Sama_3272	0.61	-0.6
3,887,839	-		Sama_3272	0.61	-0.9
3,887,862	+		Sama_3272	0.64	-1.4
3,887,862	+		Sama_3272	0.64	+0.4
3,887,862	+		Sama_3272	0.64	+0.7
3,887,862	+		Sama_3272	0.64	+0.2
3,887,863	-		Sama_3272	0.65	-0.8
3,887,863	-		Sama_3272	0.65	-0.4
3,887,863	-		Sama_3272	0.65	-0.5
3,887,863	-		Sama_3272	0.65	-1.0
3,887,863	-		Sama_3272	0.65	-0.6
3,887,863	-		Sama_3272	0.65	-0.3
3,887,863	-		Sama_3272	0.65	-0.5
3,887,863	-		Sama_3272	0.65	+0.2
3,887,863	-		Sama_3272	0.65	-0.1
3,887,863	-		Sama_3272	0.65	+0.8
3,887,863	-		Sama_3272	0.65	+1.2
3,887,863	-		Sama_3272	0.65	+1.4