Strain Fitness in Shewanella amazonensis SB2B around Sama_3249

Experiment: acetate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate
3,842,459	+		Sama_3247	0.59	-1.8
3,842,459	+		Sama_3247	0.59	+0.3
3,842,553	+		Sama_3247	0.70	-1.7
3,842,553	+		Sama_3247	0.70	-0.6
3,842,554	-		Sama_3247	0.70	-3.8
3,842,706	+		Sama_3247	0.87	-0.8
3,842,741	+				-0.8
3,842,741	+				-0.8
3,842,741	+				-2.2
3,842,741	+				-1.4
3,842,741	+				-2.4
3,842,741	+				-1.0
3,842,742	-				-0.7
3,842,742	-				-0.2
3,842,742	-				-2.2
3,842,742	-				+1.2
3,842,742	-				-0.3
3,842,760	+				+0.2
3,842,761	-				-2.0
3,842,790	-				-1.4
3,842,823	-				+0.2
3,842,862	-				-0.4
3,842,862	-				-1.2
3,842,862	-				+0.2
3,842,930	+		Sama_3248	0.17	+0.8
3,842,930	+		Sama_3248	0.17	-0.2
3,842,930	+		Sama_3248	0.17	+0.3
3,842,930	+		Sama_3248	0.17	+0.2
3,842,931	-		Sama_3248	0.17	-1.8
3,842,931	-		Sama_3248	0.17	+0.6
3,842,931	-		Sama_3248	0.17	-0.3
3,842,993	+		Sama_3248	0.26	-3.7
3,842,993	+		Sama_3248	0.26	-1.4
3,842,994	-		Sama_3248	0.27	-0.3
3,843,017	-		Sama_3248	0.30	-1.4
3,843,030	+		Sama_3248	0.32	-0.8
3,843,030	+		Sama_3248	0.32	-1.7
3,843,030	+		Sama_3248	0.32	-1.4
3,843,031	-		Sama_3248	0.32	-0.3
3,843,031	-		Sama_3248	0.32	+0.8
3,843,031	-		Sama_3248	0.32	+0.7
3,843,097	+		Sama_3248	0.43	-0.8
3,843,098	-		Sama_3248	0.43	-1.4
3,843,098	-		Sama_3248	0.43	-1.2
3,843,098	-		Sama_3248	0.43	+0.9
3,843,098	-		Sama_3248	0.43	+0.2
3,843,113	-		Sama_3248	0.45	+0.5
3,843,113	-		Sama_3248	0.45	+0.1
3,843,155	+		Sama_3248	0.52	-1.7
3,843,155	+		Sama_3248	0.52	-1.1
3,843,155	+		Sama_3248	0.52	-1.0
3,843,155	+		Sama_3248	0.52	-0.5
3,843,156	-		Sama_3248	0.52	-0.3
3,843,156	-		Sama_3248	0.52	+0.2
3,843,156	-		Sama_3248	0.52	-1.0
3,843,156	-		Sama_3248	0.52	+0.7
3,843,205	+		Sama_3248	0.60	-0.4
3,843,365	+		Sama_3248	0.85	-1.7
3,843,460	+				-0.4
3,843,461	-				+0.5
3,844,288	-				+1.6
3,844,288	-				-1.2
3,844,288	-				-2.3
3,844,288	-				-1.2
3,844,288	-				-2.4
3,844,288	-				-2.2
3,844,288	-				-1.2
3,844,408	+				-3.3
3,844,408	+				-2.7
3,844,408	+				-2.4
3,844,408	+				-2.8
3,844,408	+				-3.1
3,844,408	+				-2.9
3,844,408	+				-2.7
3,844,408	+				+0.2
3,844,408	+				-3.2
3,844,408	+				-2.9
3,844,408	+				-0.4
3,844,408	+				-2.7
3,844,408	+				-2.3
3,844,409	-				-3.7
3,844,409	-				-3.2
3,844,409	-				-2.3
3,844,409	-				-2.2
3,844,409	-				-1.7
3,844,409	-				-2.2
3,844,409	-				-1.8
3,844,409	-				-2.2
3,844,409	-				-1.3
3,844,409	-				-3.0
3,844,409	-				-2.2
3,844,409	-				-3.4
3,844,409	-				-2.3
3,844,409	-				-3.0
3,844,409	-				-3.2
3,844,455	-				-2.9
3,844,459	+				-3.8
3,844,459	+				-2.2
3,844,459	+				-2.0
3,844,459	+				-3.4
3,844,459	+				-2.0
3,844,459	+				-3.4
3,844,460	-				-1.2
3,844,460	-				-1.2
3,844,460	-				-1.8
3,844,460	-				-3.0
3,844,500	+		Sama_3250	0.12	-1.2
3,844,710	-		Sama_3250	0.29	-3.5
3,844,710	-		Sama_3250	0.29	-3.6
3,844,720	+		Sama_3250	0.30	-2.8
3,844,720	+		Sama_3250	0.30	+0.2
3,844,720	+		Sama_3250	0.30	-2.3
3,844,720	+		Sama_3250	0.30	-2.9
3,844,720	+		Sama_3250	0.30	-1.4
3,844,721	-		Sama_3250	0.30	+0.2
3,844,733	+		Sama_3250	0.31	-0.8
3,844,734	-		Sama_3250	0.31	-3.5
3,844,734	-		Sama_3250	0.31	-3.8
3,844,787	+		Sama_3250	0.35	-3.4
3,844,788	-		Sama_3250	0.35	-2.3
3,844,788	-		Sama_3250	0.35	-1.8
3,844,788	-		Sama_3250	0.35	-3.2
3,844,828	+		Sama_3250	0.39	-2.2
3,844,829	-		Sama_3250	0.39	-3.3
3,844,829	-		Sama_3250	0.39	-1.8
3,844,829	-		Sama_3250	0.39	-1.2
3,844,829	-		Sama_3250	0.39	-2.4
3,844,861	+		Sama_3250	0.41	-2.3
3,844,861	+		Sama_3250	0.41	-2.8
3,844,861	+		Sama_3250	0.41	-1.7
3,844,861	+		Sama_3250	0.41	-4.4
3,844,861	+		Sama_3250	0.41	-3.5
3,844,862	-		Sama_3250	0.41	-3.7
3,844,862	-		Sama_3250	0.41	-2.3
3,844,862	-		Sama_3250	0.41	-1.8
3,844,862	-		Sama_3250	0.41	-2.7
3,844,862	-		Sama_3250	0.41	-2.8
3,844,884	+		Sama_3250	0.43	-0.2
3,844,884	+		Sama_3250	0.43	-1.7
3,844,884	+		Sama_3250	0.43	-2.3
3,844,885	-		Sama_3250	0.43	-2.8
3,844,885	-		Sama_3250	0.43	-2.7
3,844,885	-		Sama_3250	0.43	-4.7
3,844,885	-		Sama_3250	0.43	-3.6
3,845,102	+		Sama_3250	0.61	-4.1
3,845,102	+		Sama_3250	0.61	-3.8
3,845,108	+		Sama_3250	0.61	-2.2
3,845,108	+		Sama_3250	0.61	-3.1
3,845,108	+		Sama_3250	0.61	-1.7
3,845,109	-		Sama_3250	0.61	-3.8
3,845,109	-		Sama_3250	0.61	-2.5
3,845,109	-		Sama_3250	0.61	-3.0
3,845,109	-		Sama_3250	0.61	-1.4
3,845,109	-		Sama_3250	0.61	-2.9
3,845,109	-		Sama_3250	0.61	-1.2
3,845,109	-		Sama_3250	0.61	-2.7
3,845,110	+		Sama_3250	0.61	-1.2
3,845,110	+		Sama_3250	0.61	-2.0
3,845,110	+		Sama_3250	0.61	-2.7
3,845,110	+		Sama_3250	0.61	-3.9
3,845,110	+		Sama_3250	0.61	-3.6
3,845,111	-		Sama_3250	0.61	-3.0
3,845,111	-		Sama_3250	0.61	-2.5
3,845,121	-		Sama_3250	0.62	-4.7
3,845,121	-		Sama_3250	0.62	-2.4
3,845,121	-		Sama_3250	0.62	+0.2
3,845,142	-		Sama_3250	0.64	-2.9
3,845,225	+		Sama_3250	0.71	-4.2
3,845,234	+		Sama_3250	0.71	-2.0
3,845,234	+		Sama_3250	0.71	-3.8
3,845,234	+		Sama_3250	0.71	-2.9
3,845,234	+		Sama_3250	0.71	-4.2
3,845,234	+		Sama_3250	0.71	-0.4
3,845,234	+		Sama_3250	0.71	-2.4
3,845,234	+		Sama_3250	0.71	-2.2
3,845,234	+		Sama_3250	0.71	-2.0
3,845,234	+		Sama_3250	0.71	-2.0
3,845,234	+		Sama_3250	0.71	-1.8
3,845,234	+		Sama_3250	0.71	-2.0
3,845,235	-		Sama_3250	0.71	-3.5
3,845,235	-		Sama_3250	0.71	-4.3
3,845,235	-		Sama_3250	0.71	-1.8
3,845,235	-		Sama_3250	0.71	-3.3
3,845,235	-		Sama_3250	0.71	-2.8
3,845,235	-		Sama_3250	0.71	-2.6
3,845,235	-		Sama_3250	0.71	-1.7