Strain Fitness in Shewanella amazonensis SB2B around Sama_2837

Experiment: acetate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate
3,373,614	+		Sama_2835	0.83	+0.6
3,373,627	-		Sama_2835	0.84	-0.2
3,373,648	+		Sama_2835	0.85	-0.4
3,373,648	+		Sama_2835	0.85	+0.2
3,373,648	+		Sama_2835	0.85	-0.2
3,373,648	+		Sama_2835	0.85	+1.6
3,373,648	+		Sama_2835	0.85	+0.9
3,373,648	+		Sama_2835	0.85	-1.0
3,373,649	-		Sama_2835	0.85	-0.7
3,373,649	-		Sama_2835	0.85	-1.1
3,373,649	-		Sama_2835	0.85	-0.3
3,373,649	-		Sama_2835	0.85	+0.9
3,373,649	-		Sama_2835	0.85	+0.2
3,373,649	-		Sama_2835	0.85	-0.3
3,373,955	+				+2.0
3,373,969	+				+0.1
3,373,969	+				+2.2
3,373,969	+				-0.4
3,373,969	+				+0.3
3,373,970	-				-0.1
3,373,986	+				+2.7
3,373,986	+				+0.8
3,373,986	+				+0.6
3,374,083	+		Sama_2836	0.15	-0.0
3,374,083	+		Sama_2836	0.15	+1.2
3,374,150	+		Sama_2836	0.27	-0.6
3,374,150	+		Sama_2836	0.27	+1.2
3,374,150	+		Sama_2836	0.27	-0.2
3,374,151	-		Sama_2836	0.27	+0.9
3,374,151	-		Sama_2836	0.27	+0.3
3,374,151	-		Sama_2836	0.27	-0.2
3,374,151	-		Sama_2836	0.27	+0.2
3,374,151	-		Sama_2836	0.27	+0.7
3,374,151	-		Sama_2836	0.27	-0.7
3,374,151	-		Sama_2836	0.27	-0.3
3,374,196	+		Sama_2836	0.36	+0.1
3,374,246	+		Sama_2836	0.45	+0.8
3,374,246	+		Sama_2836	0.45	+0.0
3,374,247	-		Sama_2836	0.45	-0.7
3,374,247	-		Sama_2836	0.45	+1.8
3,374,310	+		Sama_2836	0.57	+0.5
3,374,310	+		Sama_2836	0.57	-1.1
3,374,355	+		Sama_2836	0.65	+1.3
3,374,355	+		Sama_2836	0.65	+0.4
3,374,355	+		Sama_2836	0.65	+0.7
3,374,355	+		Sama_2836	0.65	+1.6
3,374,355	+		Sama_2836	0.65	-0.3
3,374,355	+		Sama_2836	0.65	+0.0
3,374,356	-		Sama_2836	0.65	+0.5
3,374,356	-		Sama_2836	0.65	-0.2
3,374,356	-		Sama_2836	0.65	-0.1
3,374,356	-		Sama_2836	0.65	+0.2
3,374,408	+		Sama_2836	0.75	-0.0
3,374,408	+		Sama_2836	0.75	+1.1
3,374,418	+		Sama_2836	0.77	+0.8
3,374,418	+		Sama_2836	0.77	-0.2
3,374,418	+		Sama_2836	0.77	+0.3
3,374,418	+		Sama_2836	0.77	+0.7
3,374,418	+		Sama_2836	0.77	+0.8
3,374,419	-		Sama_2836	0.77	+1.2
3,374,419	-		Sama_2836	0.77	+0.0
3,374,440	+		Sama_2836	0.81	+0.5
3,374,440	+		Sama_2836	0.81	-0.2
3,374,441	-		Sama_2836	0.81	+1.0
3,374,441	-		Sama_2836	0.81	-0.9
3,374,450	+		Sama_2836	0.83	-1.1
3,374,451	-		Sama_2836	0.83	+0.9
3,374,478	+		Sama_2836	0.88	+0.7
3,374,478	+		Sama_2836	0.88	-1.7
3,374,478	+		Sama_2836	0.88	+1.5
3,374,478	+		Sama_2836	0.88	+0.3
3,374,478	+		Sama_2836	0.88	-1.7
3,374,478	+		Sama_2836	0.88	-0.1
3,374,478	+		Sama_2836	0.88	+1.4
3,374,479	-		Sama_2836	0.88	-0.3
3,374,479	-		Sama_2836	0.88	+1.2
3,374,479	-		Sama_2836	0.88	+0.4
3,374,479	-		Sama_2836	0.88	+0.7
3,374,613	+				+1.3
3,374,613	+				+0.0
3,374,614	-				-0.4
3,374,614	-				-0.7
3,374,614	-				-0.7
3,374,720	+		Sama_2837	0.15	-2.4
3,374,720	+		Sama_2837	0.15	-2.7
3,374,720	+		Sama_2837	0.15	-3.3
3,374,721	-		Sama_2837	0.15	-3.3
3,374,721	-		Sama_2837	0.15	-3.4
3,374,721	-		Sama_2837	0.15	-3.8
3,374,724	+		Sama_2837	0.15	-2.4
3,374,724	+		Sama_2837	0.15	-0.1
3,374,724	+		Sama_2837	0.15	-3.4
3,374,724	+		Sama_2837	0.15	-2.3
3,374,724	+		Sama_2837	0.15	-1.4
3,374,725	-		Sama_2837	0.16	-2.3
3,374,725	-		Sama_2837	0.16	-1.9
3,374,725	-		Sama_2837	0.16	-4.3
3,374,725	-		Sama_2837	0.16	-2.7
3,374,725	-		Sama_2837	0.16	-1.9
3,374,772	+		Sama_2837	0.22	-0.1
3,374,772	+		Sama_2837	0.22	-0.7
3,374,773	-		Sama_2837	0.22	-2.7
3,374,773	-		Sama_2837	0.22	-2.9
3,374,773	-		Sama_2837	0.22	-3.2
3,374,818	+		Sama_2837	0.28	-3.1
3,374,819	-		Sama_2837	0.28	-3.3
3,374,900	-		Sama_2837	0.40	-2.1
3,374,959	-		Sama_2837	0.48	-1.4
3,375,040	-		Sama_2837	0.59	-1.0
3,375,047	-		Sama_2837	0.60	-0.1
3,375,047	-		Sama_2837	0.60	-3.4
3,375,082	+		Sama_2837	0.64	-2.5
3,375,083	-		Sama_2837	0.65	-1.4
3,375,091	-		Sama_2837	0.66	-3.1
3,375,109	-		Sama_2837	0.68	-3.0
3,375,146	+		Sama_2837	0.73	-2.7
3,375,147	-		Sama_2837	0.73	-1.7
3,375,184	+		Sama_2837	0.78	-2.5
3,375,200	+		Sama_2837	0.81	-1.7
3,375,201	-		Sama_2837	0.81	-2.9
3,375,201	-		Sama_2837	0.81	-0.7
3,375,206	-		Sama_2837	0.81	-2.9
3,375,262	+		Sama_2837	0.89	-4.0
3,375,272	+				-1.1
3,375,272	+				-3.4
3,375,272	+				-2.8
3,375,273	-				-1.9
3,375,273	-				-1.1
3,375,323	+				+0.5
3,375,333	+				-1.0
3,375,334	-				-0.1
3,375,344	+				-2.7
3,375,344	+				-2.4
3,375,344	+				-2.7
3,375,344	+				-3.3
3,375,344	+				-2.6
3,375,345	-				-0.7
3,375,345	-				-1.4
3,375,345	-				-1.8
3,375,345	-				-3.3
3,375,345	-				-1.6
3,375,345	-				-1.7
3,375,345	-				-0.1
3,375,491	+				-2.5
3,375,586	-				-3.7
3,375,591	-				-2.4
3,375,612	-		Sama_2838	0.10	-3.4
3,375,629	+		Sama_2838	0.11	-3.6
3,375,640	+		Sama_2838	0.12	-4.2
3,375,640	+		Sama_2838	0.12	-1.4
3,375,641	-		Sama_2838	0.12	-2.3
3,375,641	-		Sama_2838	0.12	-1.1
3,375,650	-		Sama_2838	0.12	-3.3
3,375,650	-		Sama_2838	0.12	-4.1
3,375,650	-		Sama_2838	0.12	-2.3
3,375,737	+		Sama_2838	0.17	-2.7
3,375,737	+		Sama_2838	0.17	-2.1
3,375,738	-		Sama_2838	0.17	-1.4
3,375,738	-		Sama_2838	0.17	-2.5
3,375,738	-		Sama_2838	0.17	-3.0
3,375,738	-		Sama_2838	0.17	-1.4
3,375,765	+		Sama_2838	0.19	-2.4
3,375,765	+		Sama_2838	0.19	-1.1
3,375,766	-		Sama_2838	0.19	-4.0
3,375,802	+		Sama_2838	0.21	-2.5
3,375,803	-		Sama_2838	0.21	-2.5
3,375,930	-		Sama_2838	0.29	-1.9
3,375,993	-		Sama_2838	0.32	-3.1
3,375,993	-		Sama_2838	0.32	-0.5
3,376,035	-		Sama_2838	0.35	-2.9
3,376,078	-		Sama_2838	0.37	+0.9
3,376,225	+		Sama_2838	0.46	-1.4
3,376,225	+		Sama_2838	0.46	-1.3
3,376,225	+		Sama_2838	0.46	-1.1
3,376,226	-		Sama_2838	0.46	-2.5
3,376,226	-		Sama_2838	0.46	-0.3
3,376,226	-		Sama_2838	0.46	-2.4
3,376,226	-		Sama_2838	0.46	-1.7
3,376,265	-		Sama_2838	0.48	-2.0
3,376,265	-		Sama_2838	0.48	-2.9
3,376,265	-		Sama_2838	0.48	-2.8
3,376,276	-		Sama_2838	0.49	-2.3