Strain Fitness in Shewanella amazonensis SB2B around Sama_2628

Experiment: acetate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate
3,146,834	-		Sama_2627	0.67	-2.5
3,146,862	+		Sama_2627	0.68	-2.3
3,146,865	+		Sama_2627	0.68	-1.2
3,146,865	+		Sama_2627	0.68	-2.0
3,146,866	-		Sama_2627	0.68	-2.9
3,146,866	-		Sama_2627	0.68	-1.8
3,146,866	-		Sama_2627	0.68	-0.2
3,146,866	-		Sama_2627	0.68	-1.6
3,146,884	+		Sama_2627	0.69	-2.1
3,146,899	+		Sama_2627	0.70	-1.2
3,146,900	-		Sama_2627	0.70	-1.3
3,146,910	+		Sama_2627	0.70	-2.0
3,146,978	+		Sama_2627	0.73	-2.3
3,146,979	-		Sama_2627	0.73	-3.0
3,147,024	+		Sama_2627	0.75	-2.1
3,147,024	+		Sama_2627	0.75	-2.2
3,147,024	+		Sama_2627	0.75	-2.6
3,147,024	+		Sama_2627	0.75	-2.6
3,147,024	+		Sama_2627	0.75	-2.5
3,147,024	+		Sama_2627	0.75	-3.3
3,147,024	+		Sama_2627	0.75	-2.6
3,147,024	+		Sama_2627	0.75	-3.9
3,147,024	+		Sama_2627	0.75	-2.5
3,147,024	+		Sama_2627	0.75	-2.5
3,147,025	-		Sama_2627	0.75	-1.5
3,147,025	-		Sama_2627	0.75	-2.5
3,147,025	-		Sama_2627	0.75	-3.1
3,147,025	-		Sama_2627	0.75	-2.0
3,147,025	-		Sama_2627	0.75	-3.1
3,147,025	-		Sama_2627	0.75	-2.2
3,147,025	-		Sama_2627	0.75	-4.1
3,147,025	-		Sama_2627	0.75	-2.0
3,147,025	-		Sama_2627	0.75	-2.9
3,147,028	+		Sama_2627	0.75	-2.9
3,147,029	-		Sama_2627	0.75	-3.2
3,147,054	-		Sama_2627	0.77	-1.6
3,147,054	-		Sama_2627	0.77	-2.8
3,147,054	-		Sama_2627	0.77	-3.9
3,147,076	-		Sama_2627	0.77	-2.1
3,147,090	+		Sama_2627	0.78	-1.9
3,147,090	+		Sama_2627	0.78	-3.1
3,147,090	+		Sama_2627	0.78	-1.0
3,147,091	-		Sama_2627	0.78	-2.3
3,147,133	-		Sama_2627	0.80	-3.3
3,147,133	-		Sama_2627	0.80	-3.1
3,147,133	-		Sama_2627	0.80	-4.4
3,147,218	+		Sama_2627	0.84	-1.5
3,147,218	+		Sama_2627	0.84	-2.2
3,147,218	+		Sama_2627	0.84	-3.1
3,147,218	+		Sama_2627	0.84	-0.8
3,147,218	+		Sama_2627	0.84	-1.8
3,147,218	+		Sama_2627	0.84	-4.3
3,147,218	+		Sama_2627	0.84	-3.3
3,147,219	-		Sama_2627	0.84	-1.3
3,147,219	-		Sama_2627	0.84	-2.6
3,147,219	-		Sama_2627	0.84	-2.7
3,147,219	-		Sama_2627	0.84	-1.5
3,147,222	+		Sama_2627	0.84	-2.8
3,147,222	+		Sama_2627	0.84	-4.6
3,147,222	+		Sama_2627	0.84	-3.3
3,147,222	+		Sama_2627	0.84	-2.1
3,147,222	+		Sama_2627	0.84	-2.2
3,147,222	+		Sama_2627	0.84	-0.4
3,147,223	-		Sama_2627	0.84	-1.8
3,147,223	-		Sama_2627	0.84	-1.5
3,147,223	-		Sama_2627	0.84	-4.6
3,147,223	-		Sama_2627	0.84	-3.2
3,147,223	-		Sama_2627	0.84	-3.0
3,147,223	-		Sama_2627	0.84	-2.3
3,147,223	-		Sama_2627	0.84	-2.7
3,147,223	-		Sama_2627	0.84	-2.3
3,147,228	+		Sama_2627	0.84	-3.0
3,147,228	+		Sama_2627	0.84	-1.8
3,147,229	-		Sama_2627	0.84	-4.0
3,147,229	-		Sama_2627	0.84	-2.5
3,147,243	+		Sama_2627	0.85	-2.2
3,147,243	+		Sama_2627	0.85	-0.8
3,147,244	-		Sama_2627	0.85	-3.0
3,147,244	-		Sama_2627	0.85	-2.8
3,147,244	-		Sama_2627	0.85	-3.1
3,147,244	-		Sama_2627	0.85	-1.5
3,147,314	-		Sama_2627	0.88	-1.2
3,147,393	+				-2.4
3,147,393	+				-3.6
3,147,393	+				-2.6
3,147,393	+				-4.0
3,147,394	-				-2.2
3,147,394	-				-2.9
3,147,394	-				-2.3
3,147,394	-				-2.9
3,147,394	-				-1.2
3,147,396	+				-2.2
3,147,396	+				-2.6
3,147,397	-				-4.4
3,147,397	-				-2.5
3,147,397	-				-1.4
3,147,397	-				-2.3
3,147,397	-				-1.8
3,147,516	+				-3.2
3,147,554	+				-0.8
3,147,574	+				-4.2
3,147,606	+				-3.6
3,147,607	-				-0.6
3,147,607	-				-2.2
3,147,609	+				-5.0
3,147,610	-				-3.0
3,147,653	+				-3.2
3,147,677	+				-2.2
3,147,686	-				-4.2
3,147,746	+				-3.0
3,147,746	+				-3.4
3,147,747	-				-2.3
3,147,747	-				-3.4
3,147,747	-				-3.7
3,147,747	-				-1.8
3,147,755	+				-3.3
3,147,755	+				-1.2
3,147,756	-				-2.2
3,147,761	+				-1.2
3,147,761	+				-3.0
3,147,761	+				-1.2
3,147,761	+				-4.0
3,147,761	+				-2.2
3,147,761	+				-2.5
3,147,761	+				-2.8
3,147,762	-				-2.0
3,147,762	-				-2.4
3,147,862	-		Sama_2628	0.12	-2.0
3,147,995	+		Sama_2628	0.27	-1.6
3,147,995	+		Sama_2628	0.27	-2.0
3,147,996	-		Sama_2628	0.27	-2.2
3,148,082	+		Sama_2628	0.37	-2.5
3,148,082	+		Sama_2628	0.37	-1.8
3,148,083	-		Sama_2628	0.37	-3.3
3,148,124	+		Sama_2628	0.41	-2.2
3,148,124	+		Sama_2628	0.41	-1.3
3,148,124	+		Sama_2628	0.41	-2.9
3,148,124	+		Sama_2628	0.41	-2.5
3,148,184	+		Sama_2628	0.48	-2.8
3,148,184	+		Sama_2628	0.48	-3.6
3,148,185	-		Sama_2628	0.48	-3.0
3,148,222	+		Sama_2628	0.52	-2.8
3,148,222	+		Sama_2628	0.52	-3.2
3,148,222	+		Sama_2628	0.52	-1.2
3,148,222	+		Sama_2628	0.52	-2.3
3,148,222	+		Sama_2628	0.52	-0.8
3,148,222	+		Sama_2628	0.52	-2.3
3,148,326	+		Sama_2628	0.64	-3.4
3,148,326	+		Sama_2628	0.64	-2.0
3,148,326	+		Sama_2628	0.64	-4.4
3,148,327	-		Sama_2628	0.64	-2.3
3,148,327	-		Sama_2628	0.64	-1.9
3,148,327	-		Sama_2628	0.64	-1.0
3,148,327	-		Sama_2628	0.64	-1.5
3,148,327	-		Sama_2628	0.64	-1.5
3,148,328	+		Sama_2628	0.64	-2.6
3,148,328	+		Sama_2628	0.64	-1.2
3,148,328	+		Sama_2628	0.64	-2.0
3,148,328	+		Sama_2628	0.64	-1.2
3,148,328	+		Sama_2628	0.64	-0.8
3,148,328	+		Sama_2628	0.64	-2.0
3,148,328	+		Sama_2628	0.64	-1.8
3,148,328	+		Sama_2628	0.64	-1.8
3,148,328	+		Sama_2628	0.64	-2.5
3,148,328	+		Sama_2628	0.64	-2.9
3,148,328	+		Sama_2628	0.64	-2.0
3,148,328	+		Sama_2628	0.64	-3.8
3,148,328	+		Sama_2628	0.64	-2.3
3,148,328	+		Sama_2628	0.64	-1.8
3,148,328	+		Sama_2628	0.64	-3.0
3,148,329	-		Sama_2628	0.64	-2.4
3,148,329	-		Sama_2628	0.64	-2.2
3,148,329	-		Sama_2628	0.64	-2.6
3,148,329	-		Sama_2628	0.64	-3.6
3,148,329	-		Sama_2628	0.64	-1.8
3,148,329	-		Sama_2628	0.64	-3.9
3,148,329	-		Sama_2628	0.64	-2.5
3,148,329	-		Sama_2628	0.64	-3.5
3,148,329	-		Sama_2628	0.64	-0.8
3,148,329	-		Sama_2628	0.64	-2.3
3,148,329	-		Sama_2628	0.64	-1.8
3,148,329	-		Sama_2628	0.64	-3.0
3,148,329	-		Sama_2628	0.64	-2.5
3,148,329	-		Sama_2628	0.64	-1.5
3,148,329	-		Sama_2628	0.64	-4.3
3,148,329	-		Sama_2628	0.64	-1.5
3,148,333	+		Sama_2628	0.65	-2.2
3,148,376	+		Sama_2628	0.69	-1.3
3,148,376	+		Sama_2628	0.69	-3.3
3,148,461	+		Sama_2628	0.79	-2.0
3,148,461	+		Sama_2628	0.79	-2.5
3,148,461	+		Sama_2628	0.79	-3.2
3,148,461	+		Sama_2628	0.79	-2.9
3,148,462	-		Sama_2628	0.79	-1.9
3,148,462	-		Sama_2628	0.79	-4.0
3,148,462	-		Sama_2628	0.79	-2.8
3,148,463	+		Sama_2628	0.79	-2.6
3,148,463	+		Sama_2628	0.79	-2.9
3,148,463	+		Sama_2628	0.79	-2.3
3,148,463	+		Sama_2628	0.79	-2.4
3,148,507	-		Sama_2628	0.84	-2.2
3,148,565	-				-2.5
3,148,603	+				-3.4
3,148,604	-				-2.9
3,148,648	+				-1.5
3,148,648	+				-0.0
3,148,649	-				+0.0
3,148,649	-				+1.0
3,148,649	-				+1.1
3,148,659	+				-0.6
3,148,659	+				-1.5
3,148,660	-				+0.1
3,148,660	-				-0.3
3,148,662	-				-0.1
3,148,662	-				-1.3
3,148,662	-				-0.6
3,148,662	-				+0.6
3,148,689	-				-2.0
3,148,691	-				-1.2
3,148,739	+				+2.4
3,148,839	+		Sama_2629	0.14	+1.6
3,148,840	-		Sama_2629	0.14	-0.5
3,148,912	-		Sama_2629	0.24	+0.1
3,148,912	-		Sama_2629	0.24	+0.1
3,148,912	-		Sama_2629	0.24	-0.6
3,148,915	+		Sama_2629	0.24	-0.2
3,148,915	+		Sama_2629	0.24	+1.7
3,148,915	+		Sama_2629	0.24	+0.0
3,148,916	-		Sama_2629	0.24	+0.1
3,148,916	-		Sama_2629	0.24	+0.1
3,148,916	-		Sama_2629	0.24	-0.3
3,148,916	-		Sama_2629	0.24	+0.2
3,148,971	-		Sama_2629	0.32	+0.8
3,149,067	+		Sama_2629	0.45	-0.2
3,149,122	+		Sama_2629	0.53	+0.4
3,149,172	-		Sama_2629	0.60	+0.4
3,149,186	+		Sama_2629	0.61	+0.5
3,149,186	+		Sama_2629	0.61	+0.0
3,149,192	+		Sama_2629	0.62	+0.7
3,149,193	-		Sama_2629	0.62	+1.1
3,149,245	-		Sama_2629	0.70	-0.4
3,149,250	+		Sama_2629	0.70	+0.0
3,149,251	-		Sama_2629	0.70	-1.8
3,149,290	+		Sama_2629	0.76	-1.0
3,149,290	+		Sama_2629	0.76	+1.2
3,149,290	+		Sama_2629	0.76	+1.1
3,149,290	+		Sama_2629	0.76	-0.3
3,149,290	+		Sama_2629	0.76	-0.0
3,149,291	-		Sama_2629	0.76	-1.3
3,149,291	-		Sama_2629	0.76	+1.1
3,149,291	-		Sama_2629	0.76	+0.3
3,149,291	-		Sama_2629	0.76	-0.7
3,149,326	-		Sama_2629	0.81	+0.3
3,149,326	-		Sama_2629	0.81	+1.0
3,149,337	+		Sama_2629	0.82	+0.2
3,149,337	+		Sama_2629	0.82	+0.5
3,149,338	-		Sama_2629	0.82	+0.1
3,149,399	-				+0.2
3,149,401	+				+0.4
3,149,402	-				-0.9
3,149,402	-				-0.1
3,149,402	-				-0.2
3,149,473	-				+0.6
3,149,478	-				+1.3
3,149,520	-				+0.6
3,149,525	+				+0.3
3,149,544	-				-0.3
3,149,544	-				+0.7
3,149,544	-				+0.3
3,149,626	+				+0.3
3,149,626	+				-0.1
3,149,626	+				-0.2
3,149,627	-				-1.5