Strain Fitness in Shewanella amazonensis SB2B around Sama_2056

Experiment: acetate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate
2,489,808	+		Sama_2054	0.18	-0.3
2,489,846	+		Sama_2054	0.23	-0.1
2,489,846	+		Sama_2054	0.23	+1.3
2,489,879	-		Sama_2054	0.28	+1.2
2,489,947	+		Sama_2054	0.37	-0.8
2,489,993	+		Sama_2054	0.44	+0.9
2,489,993	+		Sama_2054	0.44	-0.3
2,489,993	+		Sama_2054	0.44	+0.1
2,489,993	+		Sama_2054	0.44	+0.7
2,489,994	-		Sama_2054	0.44	-1.6
2,490,013	+		Sama_2054	0.46	-0.6
2,490,065	+		Sama_2054	0.54	-1.0
2,490,065	+		Sama_2054	0.54	+0.4
2,490,066	-		Sama_2054	0.54	+0.1
2,490,066	-		Sama_2054	0.54	-0.9
2,490,066	-		Sama_2054	0.54	+0.3
2,490,066	-		Sama_2054	0.54	+0.1
2,490,066	-		Sama_2054	0.54	-1.2
2,490,114	+		Sama_2054	0.61	+0.6
2,490,115	-		Sama_2054	0.61	-0.5
2,490,133	-		Sama_2054	0.63	+1.2
2,490,156	+		Sama_2054	0.67	+1.8
2,490,157	-		Sama_2054	0.67	-0.3
2,490,179	-		Sama_2054	0.70	+0.9
2,490,182	+		Sama_2054	0.70	+1.0
2,490,183	-		Sama_2054	0.70	-0.9
2,490,281	+		Sama_2054	0.84	+0.4
2,490,320	+		Sama_2054	0.89	-0.3
2,490,321	-		Sama_2054	0.90	+1.2
2,490,321	-		Sama_2054	0.90	+0.3
2,490,321	-		Sama_2054	0.90	+0.6
2,490,321	-		Sama_2054	0.90	-1.8
2,490,376	+				-1.0
2,490,377	-				-0.3
2,490,407	+				-1.3
2,490,416	+				-0.3
2,490,416	+				-0.8
2,490,416	+				+0.6
2,490,416	+				+0.7
2,490,416	+				-1.0
2,490,416	+				+0.6
2,490,416	+				+1.6
2,490,416	+				-0.3
2,490,416	+				+1.2
2,490,416	+				+0.2
2,490,416	+				-2.2
2,490,416	+				+1.7
2,490,416	+				+0.7
2,490,416	+				+1.2
2,490,416	+				+1.3
2,490,416	+				+0.2
2,490,416	+				+0.9
2,490,416	+				+0.3
2,490,416	+				-1.8
2,490,416	+				+0.6
2,490,416	+				-1.6
2,490,416	+				-0.4
2,490,416	+				+0.1
2,490,416	+				-0.8
2,490,416	+				-1.2
2,490,417	-				-0.2
2,490,417	-				+1.9
2,490,417	-				-0.2
2,490,417	-				-0.2
2,490,417	-				+0.1
2,490,417	-				+0.6
2,490,417	-				-0.3
2,490,417	-				+0.1
2,490,417	-				-1.4
2,490,417	-				-0.5
2,490,417	-				-0.9
2,490,417	-				-0.3
2,490,417	-				+2.2
2,490,417	-				+0.0
2,490,417	-				-0.3
2,490,417	-				+0.6
2,490,417	-				+0.1
2,490,417	-				+0.9
2,490,419	-				+1.0
2,490,953	+				+0.1
2,490,953	+				+0.2
2,490,953	+				-2.1
2,490,954	-				-0.0
2,490,954	-				-2.4
2,491,077	-		Sama_2056	0.13	-1.4
2,491,083	+		Sama_2056	0.13	+0.3
2,491,083	+		Sama_2056	0.13	-0.2
2,491,097	+		Sama_2056	0.13	-0.3
2,491,098	-		Sama_2056	0.14	-1.3
2,491,205	+		Sama_2056	0.18	+3.2
2,491,325	+		Sama_2056	0.24	-0.6
2,491,325	+		Sama_2056	0.24	-1.3
2,491,325	+		Sama_2056	0.24	+1.7
2,491,326	-		Sama_2056	0.24	-3.1
2,491,326	-		Sama_2056	0.24	-0.6
2,491,326	-		Sama_2056	0.24	-1.0
2,491,328	-		Sama_2056	0.24	+0.2
2,491,328	-		Sama_2056	0.24	-0.4
2,491,328	-		Sama_2056	0.24	-1.6
2,491,386	-		Sama_2056	0.26	-0.0
2,491,429	+		Sama_2056	0.28	-2.5
2,491,459	-		Sama_2056	0.29	-1.9
2,491,459	-		Sama_2056	0.29	-1.2
2,491,459	-		Sama_2056	0.29	+0.6
2,491,477	+		Sama_2056	0.30	-1.2
2,491,713	-		Sama_2056	0.41	-2.6
2,491,713	-		Sama_2056	0.41	-1.5
2,491,713	-		Sama_2056	0.41	-1.0
2,491,713	-		Sama_2056	0.41	-0.8
2,491,742	+		Sama_2056	0.42	-1.0
2,491,742	+		Sama_2056	0.42	+0.2
2,491,786	-		Sama_2056	0.44	-0.4
2,491,842	+		Sama_2056	0.46	-1.7
2,491,843	-		Sama_2056	0.46	-3.5
2,491,853	+		Sama_2056	0.47	+1.2
2,491,931	-		Sama_2056	0.50	-0.6
2,491,931	-		Sama_2056	0.50	-1.8
2,491,931	-		Sama_2056	0.50	-0.8
2,491,935	+		Sama_2056	0.51	-1.5
2,491,954	+		Sama_2056	0.51	-0.2
2,492,012	+		Sama_2056	0.54	-2.8
2,492,012	+		Sama_2056	0.54	-2.1
2,492,013	-		Sama_2056	0.54	-2.0
2,492,016	+		Sama_2056	0.54	-0.4
2,492,016	+		Sama_2056	0.54	-1.5
2,492,017	-		Sama_2056	0.54	-2.6
2,492,017	-		Sama_2056	0.54	-1.4
2,492,017	-		Sama_2056	0.54	-1.0
2,492,175	+		Sama_2056	0.61	-1.2
2,492,175	+		Sama_2056	0.61	-2.6
2,492,176	+		Sama_2056	0.61	-1.7
2,492,176	-		Sama_2056	0.61	+0.6
2,492,176	-		Sama_2056	0.61	-2.2
2,492,176	-		Sama_2056	0.61	-0.6
2,492,176	-		Sama_2056	0.61	-1.9
2,492,177	+		Sama_2056	0.61	+0.6
2,492,177	+		Sama_2056	0.61	-0.4
2,492,177	+		Sama_2056	0.61	-1.3
2,492,178	-		Sama_2056	0.61	-2.9
2,492,178	-		Sama_2056	0.61	-1.4
2,492,183	+		Sama_2056	0.61	-0.4
2,492,183	+		Sama_2056	0.61	-1.6
2,492,183	+		Sama_2056	0.61	-0.4
2,492,184	-		Sama_2056	0.62	-1.7
2,492,188	-		Sama_2056	0.62	-2.2
2,492,188	-		Sama_2056	0.62	-1.1
2,492,217	-		Sama_2056	0.63	-0.4
2,492,247	-		Sama_2056	0.64	-1.4
2,492,273	-		Sama_2056	0.65	-1.6
2,492,273	-		Sama_2056	0.65	-0.4
2,492,311	+		Sama_2056	0.67	-1.9
2,492,311	+		Sama_2056	0.67	-1.4
2,492,313	+		Sama_2056	0.67	-1.9
2,492,313	+		Sama_2056	0.67	-1.4
2,492,314	-		Sama_2056	0.67	-0.8
2,492,314	-		Sama_2056	0.67	-1.4
2,492,314	-		Sama_2056	0.67	-1.4
2,492,381	+		Sama_2056	0.70	-1.2
2,492,514	+		Sama_2056	0.76	-2.2
2,492,644	+		Sama_2056	0.82	-1.9
2,492,644	+		Sama_2056	0.82	-2.2
2,492,645	-		Sama_2056	0.82	-1.8
2,492,645	-		Sama_2056	0.82	-1.8
2,492,645	-		Sama_2056	0.82	-0.8
2,492,670	-		Sama_2056	0.83	-2.0
2,492,670	-		Sama_2056	0.83	-1.8
2,492,690	-		Sama_2056	0.84	-2.0
2,492,690	-		Sama_2056	0.84	-3.6
2,492,690	-		Sama_2056	0.84	-0.9
2,492,690	-		Sama_2056	0.84	-2.8
2,492,690	-		Sama_2056	0.84	-2.6
2,492,829	-				-0.7
2,492,897	+				-1.8
2,492,897	+				-2.0
2,492,897	+				+0.9
2,492,897	+				-1.4
2,492,898	-				-1.4
2,492,898	-				-2.6
2,492,901	+				-0.9
2,492,901	+				+0.6
2,492,901	+				+0.2
2,492,902	-				-2.0
2,492,902	-				-2.8
2,492,902	-				-0.7
2,492,902	-				-1.3
2,492,902	-				-2.0
2,492,902	-				-1.8
2,492,984	-				-2.6
2,492,984	-				-2.0
2,493,054	-				-0.4
2,493,054	-				-1.8
2,493,054	-				-1.2
2,493,077	-				-1.0
2,493,077	-				-0.3
2,493,127	-				-1.0
2,493,208	-	clpS	Sama_2057	0.34	-0.9
2,493,216	-	clpS	Sama_2057	0.37	-0.7
2,493,286	-	clpS	Sama_2057	0.60	+1.6
2,493,291	+	clpS	Sama_2057	0.61	+1.2
2,493,291	+	clpS	Sama_2057	0.61	+0.2
2,493,313	+	clpS	Sama_2057	0.68	-2.3
2,493,338	-	clpS	Sama_2057	0.76	+0.6
2,493,338	+	clpS	Sama_2057	0.76	+1.6
2,493,338	+	clpS	Sama_2057	0.76	-1.4
2,493,339	-	clpS	Sama_2057	0.77	+0.4
2,493,340	+	clpS	Sama_2057	0.77	-1.5
2,493,341	-	clpS	Sama_2057	0.77	-3.2
2,493,341	-	clpS	Sama_2057	0.77	-1.4
2,493,341	-	clpS	Sama_2057	0.77	-0.8
2,493,341	-	clpS	Sama_2057	0.77	+0.6
2,493,382	-				-0.0
2,493,382	-				+1.3
2,493,390	+				-1.8
2,493,393	-				-0.7
2,493,412	+				-1.9
2,493,412	+				-0.4
2,493,412	+				-1.1
2,493,412	+				-1.0
2,493,412	+				-1.8
2,493,412	+				-0.2
2,493,413	-				-0.0
2,493,413	-				-0.7
2,493,413	-				+0.3
2,493,413	-				+1.1
2,493,413	-				-0.4
2,493,413	-				-0.8
2,493,413	-				-0.3
2,493,418	+				-1.1
2,493,418	+				-1.8
2,493,419	-				-0.8
2,493,419	-				-2.2
2,493,419	-				+1.8
2,493,419	-				-0.8
2,493,422	-				-2.2
2,493,434	-				+0.1
2,493,434	-				+2.2
2,493,520	+				-2.9
2,493,521	-				-1.0
2,493,552	+				-2.1
2,493,552	+				-0.4
2,493,552	+				+0.2
2,493,552	+				-1.4
2,493,552	+				-2.0
2,493,552	+				-1.3
2,493,553	-				-2.4
2,493,564	+				-0.4
2,493,564	+				-2.2
2,493,565	-				-0.5
2,493,574	+				+2.2
2,493,574	+				-1.3
2,493,574	+				-1.0
2,493,577	+				+0.2
2,493,577	+				-1.1
2,493,578	-				-1.2
2,493,578	-				-1.7
2,493,582	+				-2.0
2,493,583	-				-0.3
2,493,583	-				-0.6
2,493,583	-				-0.4
2,493,592	+				-0.7
2,493,592	+				+0.9
2,493,615	+				-0.5
2,493,615	+				+0.6
2,493,633	+				-0.4
2,493,633	+				+0.3
2,493,633	+				+0.4
2,493,633	+				+0.2
2,493,633	+				-1.5
2,493,633	+				-1.8
2,493,633	+				-1.0
2,493,634	-				-1.0
2,493,634	-				-2.9
2,493,667	-		Sama_2058	0.25	-1.1
2,493,695	+		Sama_2058	0.38	-0.4
2,493,695	+		Sama_2058	0.38	-2.0
2,493,696	-		Sama_2058	0.39	-2.4
2,493,696	-		Sama_2058	0.39	-1.2
2,493,696	-		Sama_2058	0.39	+0.2
2,493,836	-				-0.3
2,493,877	+				-0.1
2,493,877	+				+1.8
2,493,877	+				-0.9
2,494,001	+				-0.2
2,494,033	-				+0.9
2,494,036	-				-1.8