Strain Fitness in Shewanella amazonensis SB2B around Sama_1760

Experiment: acetate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate
2,152,130	-		Sama_1759	0.13	+1.7
2,152,143	+		Sama_1759	0.14	-0.6
2,152,155	+		Sama_1759	0.15	+1.2
2,152,161	+		Sama_1759	0.16	+0.4
2,152,161	+		Sama_1759	0.16	+1.4
2,152,164	+		Sama_1759	0.16	+0.6
2,152,164	+		Sama_1759	0.16	+0.7
2,152,255	-		Sama_1759	0.25	-0.5
2,152,255	-		Sama_1759	0.25	-1.2
2,152,274	+		Sama_1759	0.26	-1.2
2,152,275	-		Sama_1759	0.26	-0.3
2,152,275	-		Sama_1759	0.26	+0.1
2,152,288	+		Sama_1759	0.28	+0.9
2,152,333	+		Sama_1759	0.32	+0.5
2,152,387	+		Sama_1759	0.37	+0.1
2,152,387	+		Sama_1759	0.37	-0.2
2,152,480	+		Sama_1759	0.46	+0.4
2,152,480	+		Sama_1759	0.46	+0.9
2,152,481	-		Sama_1759	0.46	-0.8
2,152,541	-		Sama_1759	0.51	-0.8
2,152,548	+		Sama_1759	0.52	+1.2
2,152,570	+		Sama_1759	0.54	+0.2
2,152,643	-		Sama_1759	0.61	-0.7
2,152,691	+		Sama_1759	0.65	+0.5
2,152,743	+		Sama_1759	0.70	-0.3
2,152,743	+		Sama_1759	0.70	-1.6
2,152,743	+		Sama_1759	0.70	+0.9
2,152,743	+		Sama_1759	0.70	-0.7
2,152,743	+		Sama_1759	0.70	-1.3
2,152,743	+		Sama_1759	0.70	+0.3
2,152,743	+		Sama_1759	0.70	+0.9
2,152,744	-		Sama_1759	0.70	-0.1
2,152,744	-		Sama_1759	0.70	+0.6
2,152,933	+		Sama_1759	0.88	-1.2
2,152,933	+		Sama_1759	0.88	+0.1
2,153,181	-				+0.7
2,153,199	-				+7.0
2,153,199	-				+7.3
2,153,318	-				+6.7
2,153,348	+				+6.9
2,153,348	+				+6.9
2,153,349	-				+7.0
2,153,349	-				+7.6
2,153,446	+		Sama_1760	0.12	+7.2
2,153,446	+		Sama_1760	0.12	+5.1
2,153,447	-		Sama_1760	0.12	+6.7
2,153,561	-		Sama_1760	0.16	+7.2
2,153,569	+		Sama_1760	0.16	+5.7
2,153,569	+		Sama_1760	0.16	+6.2
2,153,569	+		Sama_1760	0.16	+6.7
2,153,569	+		Sama_1760	0.16	+8.3
2,153,570	-		Sama_1760	0.16	+7.6
2,153,570	-		Sama_1760	0.16	+8.1
2,153,570	-		Sama_1760	0.16	+6.7
2,153,641	-		Sama_1760	0.19	+6.9
2,153,718	-		Sama_1760	0.21	+6.9
2,153,770	-		Sama_1760	0.23	+6.1
2,153,912	+		Sama_1760	0.29	+7.3
2,153,912	+		Sama_1760	0.29	+5.9
2,153,912	+		Sama_1760	0.29	+6.8
2,153,912	+		Sama_1760	0.29	+6.0
2,153,912	+		Sama_1760	0.29	+5.5
2,153,913	-		Sama_1760	0.29	+6.8
2,153,913	-		Sama_1760	0.29	+7.6
2,153,941	+		Sama_1760	0.30	+6.5
2,153,941	+		Sama_1760	0.30	+6.4
2,153,942	-		Sama_1760	0.30	+6.1
2,153,942	-		Sama_1760	0.30	+6.7
2,153,961	-		Sama_1760	0.30	+6.4
2,154,042	+		Sama_1760	0.33	+5.5
2,154,205	-		Sama_1760	0.39	+6.7
2,154,218	-		Sama_1760	0.40	+7.2
2,154,231	-		Sama_1760	0.40	+7.7
2,154,252	+		Sama_1760	0.41	+7.5
2,154,326	+		Sama_1760	0.44	+7.5
2,154,326	+		Sama_1760	0.44	+5.7
2,154,327	-		Sama_1760	0.44	+6.9
2,154,327	-		Sama_1760	0.44	+7.4
2,154,330	+		Sama_1760	0.44	+6.6
2,154,330	+		Sama_1760	0.44	+6.7
2,154,331	-		Sama_1760	0.44	+7.5
2,154,331	-		Sama_1760	0.44	+7.6
2,154,331	-		Sama_1760	0.44	+7.2
2,154,346	+		Sama_1760	0.44	+5.0
2,154,347	-		Sama_1760	0.44	+6.9
2,154,512	+		Sama_1760	0.51	+6.4
2,154,512	+		Sama_1760	0.51	+6.3
2,154,512	+		Sama_1760	0.51	+6.3
2,154,513	-		Sama_1760	0.51	+6.6
2,154,513	-		Sama_1760	0.51	+5.7
2,154,513	-		Sama_1760	0.51	+6.5
2,154,513	-		Sama_1760	0.51	+6.9
2,154,592	+		Sama_1760	0.53	+6.7
2,154,593	-		Sama_1760	0.53	+5.6
2,154,593	-		Sama_1760	0.53	+7.2
2,154,622	-		Sama_1760	0.55	+6.2
2,154,775	+		Sama_1760	0.60	+7.8
2,154,776	-		Sama_1760	0.60	+7.2
2,154,863	+		Sama_1760	0.63	+6.6
2,154,902	+		Sama_1760	0.65	+7.9
2,154,903	-		Sama_1760	0.65	+5.3
2,154,903	-		Sama_1760	0.65	+5.4
2,154,941	+		Sama_1760	0.66	+6.2
2,155,037	+		Sama_1760	0.70	+5.8
2,155,037	+		Sama_1760	0.70	+8.1
2,155,037	+		Sama_1760	0.70	+5.8
2,155,038	-		Sama_1760	0.70	+6.1
2,155,038	-		Sama_1760	0.70	+5.7
2,155,139	+		Sama_1760	0.73	+5.8
2,155,157	+		Sama_1760	0.74	+5.5
2,155,157	+		Sama_1760	0.74	+6.3
2,155,158	-		Sama_1760	0.74	+6.9
2,155,217	+		Sama_1760	0.76	+6.8
2,155,218	-		Sama_1760	0.76	+7.8
2,155,219	+		Sama_1760	0.76	+6.9
2,155,219	+		Sama_1760	0.76	+6.9
2,155,219	+		Sama_1760	0.76	+7.6
2,155,219	+		Sama_1760	0.76	+8.1
2,155,219	+		Sama_1760	0.76	+7.0
2,155,219	+		Sama_1760	0.76	+5.8
2,155,219	+		Sama_1760	0.76	+7.1
2,155,219	+		Sama_1760	0.76	+6.6
2,155,219	+		Sama_1760	0.76	+7.0
2,155,219	+		Sama_1760	0.76	+7.2
2,155,220	-		Sama_1760	0.76	+7.3
2,155,220	-		Sama_1760	0.76	+6.6
2,155,220	-		Sama_1760	0.76	+6.4
2,155,220	-		Sama_1760	0.76	+7.0
2,155,308	-		Sama_1760	0.80	+6.5
2,155,350	+		Sama_1760	0.81	+6.7
2,155,350	+		Sama_1760	0.81	+7.3
2,155,351	-		Sama_1760	0.81	+7.3
2,155,351	-		Sama_1760	0.81	+5.9
2,155,351	-		Sama_1760	0.81	+7.6
2,155,351	-		Sama_1760	0.81	+7.6
2,155,442	+		Sama_1760	0.85	+6.6
2,155,572	-		Sama_1760	0.89	+7.3
2,155,572	-		Sama_1760	0.89	+6.6
2,155,714	+				+6.6
2,155,835	+				+7.0
2,155,900	+				+6.0
2,155,901	-				+1.4
2,155,901	-				+0.6
2,155,956	-				+1.5
2,155,973	+				-0.6
2,155,984	-				+0.4
2,156,107	-		Sama_R0066	0.45	+1.1
2,156,120	-		Sama_R0066	0.62	-0.8
2,156,128	-		Sama_R0066	0.73	-0.4
2,156,149	-				-0.3
2,156,149	-				-0.9
2,156,149	-				+0.2
2,156,149	-				-0.3
2,156,149	-				+0.3
2,156,149	-				-0.5
2,156,149	-				-0.2
2,156,149	-				-0.3
2,156,192	-				-0.3
2,156,223	-		Sama_R0067	0.45	+0.2
2,156,223	-		Sama_R0067	0.45	+0.5
2,156,257	-				-0.7
2,156,292	-				-1.2
2,156,294	-				+1.2
2,156,297	-				+0.4
2,156,297	-				+1.2
2,156,411	+				-0.6
2,156,565	-		Sama_1761	0.11	-0.4
2,156,578	-		Sama_1761	0.12	-0.6
2,156,610	-		Sama_1761	0.15	+0.9
2,156,631	+		Sama_1761	0.16	-0.8
2,156,632	-		Sama_1761	0.16	-0.2
2,156,634	-		Sama_1761	0.16	-0.7
2,156,665	+		Sama_1761	0.19	-2.2
2,156,666	-		Sama_1761	0.19	-0.4
2,156,684	+		Sama_1761	0.20	+0.1
2,156,685	-		Sama_1761	0.20	-0.6
2,156,745	-		Sama_1761	0.25	-1.2
2,156,745	-		Sama_1761	0.25	-0.1
2,156,770	+		Sama_1761	0.26	+0.7
2,156,770	+		Sama_1761	0.26	-0.9
2,156,782	-		Sama_1761	0.27	+0.8
2,156,790	+		Sama_1761	0.28	+0.1
2,156,791	-		Sama_1761	0.28	-0.3
2,156,801	-		Sama_1761	0.29	+0.0
2,156,834	-		Sama_1761	0.31	+0.6