Strain Fitness in Shewanella amazonensis SB2B around Sama_1367

Experiment: acetate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_1366 and Sama_1367 are separated by 132 nucleotidesSama_1367 and Sama_1368 are separated by 65 nucleotidesSama_1368 and Sama_1369 overlap by 1 nucleotides Sama_1366: Sama_1366 - 1,4-dihydroxy-2-naphthoate octaprenyltransferase (RefSeq), at 1,657,990 to 1,658,955 _1366 Sama_1367: Sama_1367 - short chain dehydrogenase/reductase family oxidoreductase (RefSeq), at 1,659,088 to 1,659,984 _1367 Sama_1368: Sama_1368 - palmitoyl-CoA hydrolase (RefSeq), at 1,660,050 to 1,660,919 _1368 Sama_1369: Sama_1369 - hypothetical protein (RefSeq), at 1,660,919 to 1,661,326 _1369 Position (kb) 1659 1660Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1658.170 kb on + strand, within Sama_1366at 1658.171 kb on - strand, within Sama_1366at 1658.171 kb on - strand, within Sama_1366at 1658.213 kb on + strand, within Sama_1366at 1658.213 kb on + strand, within Sama_1366at 1658.213 kb on + strand, within Sama_1366at 1658.213 kb on + strand, within Sama_1366at 1658.214 kb on - strand, within Sama_1366at 1658.214 kb on - strand, within Sama_1366at 1658.229 kb on - strand, within Sama_1366at 1658.400 kb on - strand, within Sama_1366at 1658.400 kb on - strand, within Sama_1366at 1658.493 kb on - strand, within Sama_1366at 1658.561 kb on + strand, within Sama_1366at 1658.562 kb on - strand, within Sama_1366at 1658.562 kb on - strand, within Sama_1366at 1658.596 kb on + strand, within Sama_1366at 1658.596 kb on + strand, within Sama_1366at 1658.597 kb on - strand, within Sama_1366at 1658.597 kb on - strand, within Sama_1366at 1658.674 kb on - strand, within Sama_1366at 1658.699 kb on + strand, within Sama_1366at 1658.699 kb on + strand, within Sama_1366at 1658.700 kb on - strand, within Sama_1366at 1658.763 kb on + strand, within Sama_1366at 1658.763 kb on + strand, within Sama_1366at 1658.763 kb on + strand, within Sama_1366at 1658.763 kb on + strand, within Sama_1366at 1658.763 kb on + strand, within Sama_1366at 1658.764 kb on - strand, within Sama_1366at 1658.766 kb on + strand, within Sama_1366at 1658.767 kb on - strand, within Sama_1366at 1658.767 kb on - strand, within Sama_1366at 1658.767 kb on - strand, within Sama_1366at 1658.767 kb on - strand, within Sama_1366at 1658.767 kb on - strand, within Sama_1366at 1658.767 kb on - strand, within Sama_1366at 1658.882 kb on - strandat 1658.882 kb on - strandat 1658.888 kb on + strandat 1658.908 kb on - strandat 1658.934 kb on + strandat 1658.957 kb on + strandat 1658.957 kb on + strandat 1658.957 kb on + strandat 1658.958 kb on - strandat 1659.047 kb on - strandat 1659.148 kb on + strandat 1659.221 kb on + strand, within Sama_1367at 1659.221 kb on + strand, within Sama_1367at 1659.222 kb on - strand, within Sama_1367at 1659.269 kb on - strand, within Sama_1367at 1659.302 kb on + strand, within Sama_1367at 1659.303 kb on - strand, within Sama_1367at 1659.303 kb on - strand, within Sama_1367at 1659.354 kb on + strand, within Sama_1367at 1659.361 kb on - strand, within Sama_1367at 1659.406 kb on - strand, within Sama_1367at 1659.494 kb on - strand, within Sama_1367at 1659.532 kb on + strand, within Sama_1367at 1659.581 kb on + strand, within Sama_1367at 1659.582 kb on - strand, within Sama_1367at 1659.591 kb on - strand, within Sama_1367at 1659.823 kb on + strand, within Sama_1367at 1659.823 kb on + strand, within Sama_1367at 1659.823 kb on + strand, within Sama_1367at 1659.823 kb on + strand, within Sama_1367at 1659.824 kb on - strand, within Sama_1367at 1659.824 kb on - strand, within Sama_1367at 1659.829 kb on + strand, within Sama_1367at 1659.829 kb on + strand, within Sama_1367at 1659.845 kb on + strand, within Sama_1367at 1659.845 kb on + strand, within Sama_1367at 1659.845 kb on + strand, within Sama_1367at 1659.845 kb on + strand, within Sama_1367at 1659.846 kb on - strand, within Sama_1367at 1660.012 kb on + strandat 1660.033 kb on + strandat 1660.046 kb on + strandat 1660.046 kb on + strandat 1660.047 kb on - strandat 1660.047 kb on - strandat 1660.061 kb on - strandat 1660.072 kb on + strandat 1660.073 kb on - strandat 1660.073 kb on - strandat 1660.073 kb on - strandat 1660.073 kb on - strandat 1660.113 kb on + strandat 1660.114 kb on - strandat 1660.237 kb on - strand, within Sama_1368at 1660.237 kb on - strand, within Sama_1368at 1660.244 kb on - strand, within Sama_1368at 1660.275 kb on + strand, within Sama_1368at 1660.275 kb on + strand, within Sama_1368at 1660.275 kb on + strand, within Sama_1368at 1660.275 kb on + strand, within Sama_1368at 1660.275 kb on + strand, within Sama_1368at 1660.276 kb on - strand, within Sama_1368at 1660.276 kb on - strand, within Sama_1368at 1660.405 kb on + strand, within Sama_1368at 1660.405 kb on + strand, within Sama_1368at 1660.405 kb on + strand, within Sama_1368at 1660.405 kb on + strand, within Sama_1368at 1660.406 kb on - strand, within Sama_1368at 1660.406 kb on - strand, within Sama_1368at 1660.406 kb on - strand, within Sama_1368at 1660.406 kb on - strand, within Sama_1368at 1660.406 kb on - strand, within Sama_1368at 1660.409 kb on + strand, within Sama_1368at 1660.409 kb on + strand, within Sama_1368at 1660.409 kb on + strand, within Sama_1368at 1660.409 kb on + strand, within Sama_1368at 1660.409 kb on + strand, within Sama_1368at 1660.409 kb on + strand, within Sama_1368at 1660.410 kb on - strand, within Sama_1368at 1660.438 kb on + strand, within Sama_1368at 1660.438 kb on + strand, within Sama_1368at 1660.439 kb on - strand, within Sama_1368at 1660.650 kb on + strand, within Sama_1368at 1660.651 kb on - strand, within Sama_1368at 1660.651 kb on - strand, within Sama_1368at 1660.786 kb on + strand, within Sama_1368at 1660.787 kb on - strand, within Sama_1368at 1660.788 kb on + strand, within Sama_1368at 1660.788 kb on + strand, within Sama_1368at 1660.788 kb on + strand, within Sama_1368at 1660.788 kb on + strand, within Sama_1368at 1660.788 kb on + strand, within Sama_1368at 1660.788 kb on + strand, within Sama_1368at 1660.788 kb on + strand, within Sama_1368at 1660.788 kb on + strand, within Sama_1368at 1660.788 kb on + strand, within Sama_1368at 1660.788 kb on + strand, within Sama_1368at 1660.788 kb on + strand, within Sama_1368at 1660.789 kb on - strand, within Sama_1368at 1660.789 kb on - strand, within Sama_1368at 1660.789 kb on - strand, within Sama_1368at 1660.789 kb on - strand, within Sama_1368at 1660.794 kb on - strand, within Sama_1368at 1660.794 kb on - strand, within Sama_1368at 1660.877 kb on + strandat 1660.898 kb on + strandat 1660.898 kb on + strandat 1660.898 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate
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1,658,170 + Sama_1366 0.19 +0.6
1,658,171 - Sama_1366 0.19 -0.7
1,658,171 - Sama_1366 0.19 -0.4
1,658,213 + Sama_1366 0.23 -0.9
1,658,213 + Sama_1366 0.23 -0.1
1,658,213 + Sama_1366 0.23 +2.9
1,658,213 + Sama_1366 0.23 -1.9
1,658,214 - Sama_1366 0.23 +0.5
1,658,214 - Sama_1366 0.23 -1.0
1,658,229 - Sama_1366 0.25 -2.6
1,658,400 - Sama_1366 0.42 +0.6
1,658,400 - Sama_1366 0.42 -2.6
1,658,493 - Sama_1366 0.52 -0.3
1,658,561 + Sama_1366 0.59 -0.2
1,658,562 - Sama_1366 0.59 -0.7
1,658,562 - Sama_1366 0.59 -0.6
1,658,596 + Sama_1366 0.63 +0.3
1,658,596 + Sama_1366 0.63 -0.1
1,658,597 - Sama_1366 0.63 -1.7
1,658,597 - Sama_1366 0.63 -0.4
1,658,674 - Sama_1366 0.71 +0.0
1,658,699 + Sama_1366 0.73 +0.4
1,658,699 + Sama_1366 0.73 -0.0
1,658,700 - Sama_1366 0.73 -1.6
1,658,763 + Sama_1366 0.80 -0.7
1,658,763 + Sama_1366 0.80 -0.4
1,658,763 + Sama_1366 0.80 +0.4
1,658,763 + Sama_1366 0.80 +2.9
1,658,763 + Sama_1366 0.80 -2.0
1,658,764 - Sama_1366 0.80 -1.6
1,658,766 + Sama_1366 0.80 -1.0
1,658,767 - Sama_1366 0.80 +0.9
1,658,767 - Sama_1366 0.80 -1.0
1,658,767 - Sama_1366 0.80 -3.0
1,658,767 - Sama_1366 0.80 -0.1
1,658,767 - Sama_1366 0.80 -1.4
1,658,767 - Sama_1366 0.80 +0.9
1,658,882 - -0.9
1,658,882 - -0.8
1,658,888 + -0.7
1,658,908 - -1.0
1,658,934 + -0.3
1,658,957 + +0.6
1,658,957 + -0.0
1,658,957 + +0.3
1,658,958 - +0.6
1,659,047 - +0.3
1,659,148 + -0.0
1,659,221 + Sama_1367 0.15 +0.6
1,659,221 + Sama_1367 0.15 -0.0
1,659,222 - Sama_1367 0.15 +0.3
1,659,269 - Sama_1367 0.20 +1.2
1,659,302 + Sama_1367 0.24 -0.7
1,659,303 - Sama_1367 0.24 +0.6
1,659,303 - Sama_1367 0.24 +0.6
1,659,354 + Sama_1367 0.30 -0.7
1,659,361 - Sama_1367 0.30 -0.3
1,659,406 - Sama_1367 0.35 -1.4
1,659,494 - Sama_1367 0.45 +1.0
1,659,532 + Sama_1367 0.49 -1.3
1,659,581 + Sama_1367 0.55 +1.9
1,659,582 - Sama_1367 0.55 -0.2
1,659,591 - Sama_1367 0.56 +1.4
1,659,823 + Sama_1367 0.82 -0.7
1,659,823 + Sama_1367 0.82 +0.6
1,659,823 + Sama_1367 0.82 -0.4
1,659,823 + Sama_1367 0.82 -0.8
1,659,824 - Sama_1367 0.82 -0.9
1,659,824 - Sama_1367 0.82 +0.1
1,659,829 + Sama_1367 0.83 +1.3
1,659,829 + Sama_1367 0.83 -0.8
1,659,845 + Sama_1367 0.84 +0.6
1,659,845 + Sama_1367 0.84 -0.4
1,659,845 + Sama_1367 0.84 -0.7
1,659,845 + Sama_1367 0.84 -0.4
1,659,846 - Sama_1367 0.85 -0.4
1,660,012 + -1.4
1,660,033 + +2.2
1,660,046 + -0.0
1,660,046 + -2.0
1,660,047 - -1.0
1,660,047 - -0.4
1,660,061 - -0.8
1,660,072 + -2.0
1,660,073 - -1.0
1,660,073 - -0.6
1,660,073 - -0.8
1,660,073 - +0.6
1,660,113 + -0.1
1,660,114 - -0.9
1,660,237 - Sama_1368 0.21 +0.4
1,660,237 - Sama_1368 0.21 +0.1
1,660,244 - Sama_1368 0.22 +0.3
1,660,275 + Sama_1368 0.26 -0.2
1,660,275 + Sama_1368 0.26 -0.5
1,660,275 + Sama_1368 0.26 -0.2
1,660,275 + Sama_1368 0.26 -0.1
1,660,275 + Sama_1368 0.26 -0.7
1,660,276 - Sama_1368 0.26 -3.1
1,660,276 - Sama_1368 0.26 +0.7
1,660,405 + Sama_1368 0.41 +0.6
1,660,405 + Sama_1368 0.41 -0.7
1,660,405 + Sama_1368 0.41 +0.6
1,660,405 + Sama_1368 0.41 -0.3
1,660,406 - Sama_1368 0.41 +1.8
1,660,406 - Sama_1368 0.41 +0.3
1,660,406 - Sama_1368 0.41 -0.7
1,660,406 - Sama_1368 0.41 +0.3
1,660,406 - Sama_1368 0.41 -0.0
1,660,409 + Sama_1368 0.41 -0.5
1,660,409 + Sama_1368 0.41 -0.2
1,660,409 + Sama_1368 0.41 -1.4
1,660,409 + Sama_1368 0.41 +0.6
1,660,409 + Sama_1368 0.41 -1.0
1,660,409 + Sama_1368 0.41 +0.1
1,660,410 - Sama_1368 0.41 -0.4
1,660,438 + Sama_1368 0.45 -0.2
1,660,438 + Sama_1368 0.45 -1.4
1,660,439 - Sama_1368 0.45 +2.2
1,660,650 + Sama_1368 0.69 -1.4
1,660,651 - Sama_1368 0.69 -0.7
1,660,651 - Sama_1368 0.69 -0.6
1,660,786 + Sama_1368 0.85 +1.2
1,660,787 - Sama_1368 0.85 +0.2
1,660,788 + Sama_1368 0.85 +0.2
1,660,788 + Sama_1368 0.85 -0.1
1,660,788 + Sama_1368 0.85 -2.2
1,660,788 + Sama_1368 0.85 -0.4
1,660,788 + Sama_1368 0.85 +0.6
1,660,788 + Sama_1368 0.85 -0.9
1,660,788 + Sama_1368 0.85 +0.2
1,660,788 + Sama_1368 0.85 +0.2
1,660,788 + Sama_1368 0.85 +1.2
1,660,788 + Sama_1368 0.85 -0.0
1,660,788 + Sama_1368 0.85 -0.6
1,660,789 - Sama_1368 0.85 -1.7
1,660,789 - Sama_1368 0.85 -1.0
1,660,789 - Sama_1368 0.85 -0.1
1,660,789 - Sama_1368 0.85 -0.0
1,660,794 - Sama_1368 0.86 -1.0
1,660,794 - Sama_1368 0.86 -0.4
1,660,877 + -0.3
1,660,898 + -0.3
1,660,898 + -0.9
1,660,898 + -0.2

Or see this region's nucleotide sequence