Strain Fitness in Shewanella amazonensis SB2B around Sama_1037

Experiment: acetate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nteno and Sama_1037 are separated by 181 nucleotidesSama_1037 and ispD overlap by 4 nucleotidesispD and ispF are separated by 9 nucleotides Sama_1036: eno - phosphopyruvate hydratase (RefSeq), at 1,255,111 to 1,256,406 eno Sama_1037: Sama_1037 - cell division protein FtsB (RefSeq), at 1,256,588 to 1,256,905 _1037 Sama_1038: ispD - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (RefSeq), at 1,256,902 to 1,257,618 ispD Sama_1039: ispF - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (RefSeq), at 1,257,628 to 1,258,110 ispF Position (kb) 1256 1257Strain fitness (log2 ratio) -1 0 1at 1256.415 kb on + strandat 1256.423 kb on - strandat 1256.432 kb on + strandat 1256.446 kb on + strandat 1256.447 kb on - strandat 1256.448 kb on + strandat 1256.448 kb on + strandat 1256.448 kb on + strandat 1256.448 kb on + strandat 1256.448 kb on + strandat 1256.449 kb on - strandat 1256.449 kb on - strandat 1256.449 kb on - strandat 1256.484 kb on + strandat 1256.485 kb on - strandat 1257.616 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate
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1,256,415 + +0.2
1,256,423 - +0.5
1,256,432 + -0.4
1,256,446 + -0.1
1,256,447 - +0.8
1,256,448 + -1.0
1,256,448 + -0.3
1,256,448 + +0.5
1,256,448 + -0.5
1,256,448 + -1.6
1,256,449 - -0.2
1,256,449 - +0.9
1,256,449 - +0.8
1,256,484 + +0.6
1,256,485 - -0.2
1,257,616 + -1.1

Or see this region's nucleotide sequence