Experiment: acetate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt thrA and Sama_0906 overlap by 4 nucleotides Sama_0906 and Sama_0907 are separated by 9 nucleotides
Sama_0905: thrA - bifunctional aspartokinase I/homeserine dehydrogenase I (RefSeq), at 1,092,368 to 1,094,833
thrA
Sama_0906: Sama_0906 - homoserine kinase (RefSeq), at 1,094,830 to 1,095,774
_0906
Sama_0907: Sama_0907 - threonine synthase (RefSeq), at 1,095,784 to 1,097,070
_0907
Position (kb)
1094
1095
1096 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1093.873 kb on + strand, within thrA at 1093.873 kb on + strand, within thrA at 1094.101 kb on + strand, within thrA at 1094.102 kb on - strand, within thrA at 1094.102 kb on - strand, within thrA at 1094.113 kb on + strand, within thrA at 1094.180 kb on + strand, within thrA at 1094.180 kb on + strand, within thrA at 1094.181 kb on - strand, within thrA at 1094.257 kb on + strand, within thrA at 1094.258 kb on - strand, within thrA at 1094.258 kb on - strand, within thrA at 1094.271 kb on + strand, within thrA at 1094.293 kb on + strand, within thrA at 1094.302 kb on + strand, within thrA at 1094.362 kb on + strand, within thrA at 1094.362 kb on + strand, within thrA at 1094.363 kb on - strand, within thrA at 1094.479 kb on - strand, within thrA at 1094.515 kb on + strand, within thrA at 1094.516 kb on - strand, within thrA at 1094.516 kb on - strand, within thrA at 1094.553 kb on + strand, within thrA at 1094.553 kb on + strand, within thrA at 1094.553 kb on + strand, within thrA at 1094.553 kb on + strand, within thrA at 1094.553 kb on + strand, within thrA at 1094.554 kb on - strand, within thrA at 1094.554 kb on - strand, within thrA at 1094.600 kb on + strand at 1094.638 kb on + strand at 1094.639 kb on - strand at 1094.639 kb on - strand at 1094.639 kb on - strand at 1094.705 kb on + strand at 1094.706 kb on - strand at 1094.714 kb on + strand at 1094.717 kb on + strand at 1094.717 kb on + strand at 1094.717 kb on + strand at 1094.718 kb on - strand at 1094.718 kb on - strand at 1094.737 kb on - strand at 1094.845 kb on + strand at 1094.845 kb on + strand at 1094.846 kb on - strand at 1094.860 kb on - strand at 1094.866 kb on - strand at 1094.866 kb on - strand at 1094.866 kb on - strand at 1094.866 kb on - strand at 1094.876 kb on + strand at 1094.877 kb on - strand at 1094.877 kb on - strand at 1094.877 kb on - strand at 1094.877 kb on - strand at 1094.973 kb on + strand, within Sama_0906 at 1094.974 kb on - strand, within Sama_0906 at 1094.974 kb on - strand, within Sama_0906 at 1094.976 kb on + strand, within Sama_0906 at 1094.977 kb on - strand, within Sama_0906 at 1095.062 kb on + strand, within Sama_0906 at 1095.063 kb on - strand, within Sama_0906 at 1095.160 kb on + strand, within Sama_0906 at 1095.175 kb on + strand, within Sama_0906 at 1095.176 kb on - strand, within Sama_0906 at 1095.256 kb on + strand, within Sama_0906 at 1095.257 kb on - strand, within Sama_0906 at 1095.277 kb on + strand, within Sama_0906 at 1095.288 kb on + strand, within Sama_0906 at 1095.352 kb on + strand, within Sama_0906 at 1095.353 kb on - strand, within Sama_0906 at 1095.421 kb on + strand, within Sama_0906 at 1095.421 kb on + strand, within Sama_0906 at 1095.421 kb on + strand, within Sama_0906 at 1095.421 kb on + strand, within Sama_0906 at 1095.421 kb on + strand, within Sama_0906 at 1095.421 kb on + strand, within Sama_0906 at 1095.421 kb on + strand, within Sama_0906 at 1095.421 kb on + strand, within Sama_0906 at 1095.421 kb on + strand, within Sama_0906 at 1095.421 kb on + strand, within Sama_0906 at 1095.422 kb on - strand, within Sama_0906 at 1095.422 kb on - strand, within Sama_0906 at 1095.422 kb on - strand, within Sama_0906 at 1095.422 kb on - strand, within Sama_0906 at 1095.422 kb on - strand, within Sama_0906 at 1095.422 kb on - strand, within Sama_0906 at 1095.422 kb on - strand, within Sama_0906 at 1095.426 kb on + strand, within Sama_0906 at 1095.426 kb on + strand, within Sama_0906 at 1095.426 kb on + strand, within Sama_0906 at 1095.426 kb on + strand, within Sama_0906 at 1095.426 kb on + strand, within Sama_0906 at 1095.426 kb on + strand, within Sama_0906 at 1095.426 kb on + strand, within Sama_0906 at 1095.427 kb on - strand, within Sama_0906 at 1095.427 kb on - strand, within Sama_0906 at 1095.427 kb on - strand, within Sama_0906 at 1095.481 kb on + strand, within Sama_0906 at 1095.481 kb on + strand, within Sama_0906 at 1095.517 kb on - strand, within Sama_0906 at 1095.517 kb on - strand, within Sama_0906 at 1095.552 kb on + strand, within Sama_0906 at 1095.597 kb on + strand, within Sama_0906 at 1095.597 kb on + strand, within Sama_0906 at 1095.597 kb on + strand, within Sama_0906 at 1095.597 kb on + strand, within Sama_0906 at 1095.597 kb on + strand, within Sama_0906 at 1095.598 kb on - strand, within Sama_0906 at 1095.598 kb on - strand, within Sama_0906 at 1095.645 kb on + strand, within Sama_0906 at 1095.697 kb on + strand at 1095.698 kb on - strand at 1095.698 kb on - strand at 1095.702 kb on + strand at 1095.702 kb on + strand at 1095.703 kb on - strand at 1095.738 kb on + strand at 1095.758 kb on + strand at 1095.759 kb on - strand at 1095.791 kb on + strand at 1095.793 kb on + strand at 1095.793 kb on + strand at 1095.794 kb on - strand at 1095.801 kb on + strand at 1095.802 kb on - strand at 1095.802 kb on - strand at 1095.885 kb on + strand at 1095.885 kb on + strand at 1095.885 kb on + strand at 1095.923 kb on + strand, within Sama_0907 at 1095.923 kb on + strand, within Sama_0907 at 1096.009 kb on - strand, within Sama_0907 at 1096.018 kb on - strand, within Sama_0907 at 1096.018 kb on - strand, within Sama_0907 at 1096.018 kb on - strand, within Sama_0907 at 1096.018 kb on - strand, within Sama_0907 at 1096.043 kb on + strand, within Sama_0907 at 1096.057 kb on + strand, within Sama_0907 at 1096.213 kb on + strand, within Sama_0907 at 1096.213 kb on + strand, within Sama_0907 at 1096.213 kb on + strand, within Sama_0907 at 1096.213 kb on + strand, within Sama_0907 at 1096.214 kb on - strand, within Sama_0907 at 1096.214 kb on - strand, within Sama_0907 at 1096.214 kb on - strand, within Sama_0907 at 1096.287 kb on + strand, within Sama_0907 at 1096.287 kb on + strand, within Sama_0907 at 1096.288 kb on - strand, within Sama_0907 at 1096.288 kb on - strand, within Sama_0907 at 1096.290 kb on + strand, within Sama_0907 at 1096.422 kb on + strand, within Sama_0907 at 1096.453 kb on + strand, within Sama_0907 at 1096.763 kb on + strand, within Sama_0907 at 1096.763 kb on + strand, within Sama_0907
Per-strain Table
Position Strand Gene LocusTag Fraction acetate remove 1,093,873 + thrA Sama_0905 0.61 -2.2 1,093,873 + thrA Sama_0905 0.61 -2.8 1,094,101 + thrA Sama_0905 0.70 -0.7 1,094,102 - thrA Sama_0905 0.70 -1.9 1,094,102 - thrA Sama_0905 0.70 -1.8 1,094,113 + thrA Sama_0905 0.71 -1.7 1,094,180 + thrA Sama_0905 0.73 -0.8 1,094,180 + thrA Sama_0905 0.73 -0.8 1,094,181 - thrA Sama_0905 0.74 -0.8 1,094,257 + thrA Sama_0905 0.77 -2.5 1,094,258 - thrA Sama_0905 0.77 -1.2 1,094,258 - thrA Sama_0905 0.77 -3.9 1,094,271 + thrA Sama_0905 0.77 -0.7 1,094,293 + thrA Sama_0905 0.78 +0.1 1,094,302 + thrA Sama_0905 0.78 +1.0 1,094,362 + thrA Sama_0905 0.81 +0.5 1,094,362 + thrA Sama_0905 0.81 +0.3 1,094,363 - thrA Sama_0905 0.81 -3.6 1,094,479 - thrA Sama_0905 0.86 -1.8 1,094,515 + thrA Sama_0905 0.87 -1.3 1,094,516 - thrA Sama_0905 0.87 -3.6 1,094,516 - thrA Sama_0905 0.87 -2.0 1,094,553 + thrA Sama_0905 0.89 -0.4 1,094,553 + thrA Sama_0905 0.89 +0.1 1,094,553 + thrA Sama_0905 0.89 -0.3 1,094,553 + thrA Sama_0905 0.89 +1.5 1,094,553 + thrA Sama_0905 0.89 +2.0 1,094,554 - thrA Sama_0905 0.89 -1.6 1,094,554 - thrA Sama_0905 0.89 -3.7 1,094,600 + -0.2 1,094,638 + +0.4 1,094,639 - -2.9 1,094,639 - -0.8 1,094,639 - -2.1 1,094,705 + -0.4 1,094,706 - -1.7 1,094,714 + +0.7 1,094,717 + +0.8 1,094,717 + +0.5 1,094,717 + -0.1 1,094,718 - -1.8 1,094,718 - -2.2 1,094,737 - -1.2 1,094,845 + -4.1 1,094,845 + -0.2 1,094,846 - -1.8 1,094,860 - -2.1 1,094,866 - -2.5 1,094,866 - -3.9 1,094,866 - -3.3 1,094,866 - -2.8 1,094,876 + -2.8 1,094,877 - -2.2 1,094,877 - -2.3 1,094,877 - -2.6 1,094,877 - -3.0 1,094,973 + Sama_0906 0.15 -2.5 1,094,974 - Sama_0906 0.15 -2.8 1,094,974 - Sama_0906 0.15 -1.2 1,094,976 + Sama_0906 0.15 -2.0 1,094,977 - Sama_0906 0.16 -3.9 1,095,062 + Sama_0906 0.25 -2.5 1,095,063 - Sama_0906 0.25 -1.8 1,095,160 + Sama_0906 0.35 -3.5 1,095,175 + Sama_0906 0.37 -2.0 1,095,176 - Sama_0906 0.37 -2.0 1,095,256 + Sama_0906 0.45 -3.0 1,095,257 - Sama_0906 0.45 -0.8 1,095,277 + Sama_0906 0.47 -2.3 1,095,288 + Sama_0906 0.48 -3.8 1,095,352 + Sama_0906 0.55 -3.6 1,095,353 - Sama_0906 0.55 +0.8 1,095,421 + Sama_0906 0.63 -4.5 1,095,421 + Sama_0906 0.63 -2.0 1,095,421 + Sama_0906 0.63 -2.6 1,095,421 + Sama_0906 0.63 -3.5 1,095,421 + Sama_0906 0.63 -3.6 1,095,421 + Sama_0906 0.63 -0.8 1,095,421 + Sama_0906 0.63 -1.5 1,095,421 + Sama_0906 0.63 -2.0 1,095,421 + Sama_0906 0.63 -2.6 1,095,421 + Sama_0906 0.63 -4.4 1,095,422 - Sama_0906 0.63 -1.8 1,095,422 - Sama_0906 0.63 -2.7 1,095,422 - Sama_0906 0.63 -2.0 1,095,422 - Sama_0906 0.63 -2.5 1,095,422 - Sama_0906 0.63 -3.4 1,095,422 - Sama_0906 0.63 -2.5 1,095,422 - Sama_0906 0.63 -3.3 1,095,426 + Sama_0906 0.63 -2.8 1,095,426 + Sama_0906 0.63 -2.3 1,095,426 + Sama_0906 0.63 -1.8 1,095,426 + Sama_0906 0.63 -1.8 1,095,426 + Sama_0906 0.63 -0.8 1,095,426 + Sama_0906 0.63 -3.5 1,095,426 + Sama_0906 0.63 -4.3 1,095,427 - Sama_0906 0.63 -4.2 1,095,427 - Sama_0906 0.63 +0.2 1,095,427 - Sama_0906 0.63 -2.8 1,095,481 + Sama_0906 0.69 -2.2 1,095,481 + Sama_0906 0.69 -3.4 1,095,517 - Sama_0906 0.73 +0.8 1,095,517 - Sama_0906 0.73 -2.6 1,095,552 + Sama_0906 0.76 -3.3 1,095,597 + Sama_0906 0.81 -1.9 1,095,597 + Sama_0906 0.81 -3.1 1,095,597 + Sama_0906 0.81 -4.0 1,095,597 + Sama_0906 0.81 -2.3 1,095,597 + Sama_0906 0.81 -2.0 1,095,598 - Sama_0906 0.81 -3.8 1,095,598 - Sama_0906 0.81 -1.5 1,095,645 + Sama_0906 0.86 -3.9 1,095,697 + -1.8 1,095,698 - -1.8 1,095,698 - -2.8 1,095,702 + -2.3 1,095,702 + -1.8 1,095,703 - -2.2 1,095,738 + -2.3 1,095,758 + -2.2 1,095,759 - -3.1 1,095,791 + -2.3 1,095,793 + -1.2 1,095,793 + -3.4 1,095,794 - -2.3 1,095,801 + -4.3 1,095,802 - -2.5 1,095,802 - -1.2 1,095,885 + -2.0 1,095,885 + -2.6 1,095,885 + -1.5 1,095,923 + Sama_0907 0.11 -0.2 1,095,923 + Sama_0907 0.11 -3.7 1,096,009 - Sama_0907 0.17 -2.5 1,096,018 - Sama_0907 0.18 -4.2 1,096,018 - Sama_0907 0.18 -0.2 1,096,018 - Sama_0907 0.18 -2.0 1,096,018 - Sama_0907 0.18 -3.1 1,096,043 + Sama_0907 0.20 -1.5 1,096,057 + Sama_0907 0.21 -3.7 1,096,213 + Sama_0907 0.33 -4.0 1,096,213 + Sama_0907 0.33 -3.4 1,096,213 + Sama_0907 0.33 -2.2 1,096,213 + Sama_0907 0.33 -3.0 1,096,214 - Sama_0907 0.33 -2.3 1,096,214 - Sama_0907 0.33 -2.6 1,096,214 - Sama_0907 0.33 -3.0 1,096,287 + Sama_0907 0.39 -3.5 1,096,287 + Sama_0907 0.39 -1.8 1,096,288 - Sama_0907 0.39 -2.0 1,096,288 - Sama_0907 0.39 -4.0 1,096,290 + Sama_0907 0.39 -1.9 1,096,422 + Sama_0907 0.50 -2.3 1,096,453 + Sama_0907 0.52 -4.5 1,096,763 + Sama_0907 0.76 -2.9 1,096,763 + Sama_0907 0.76 -0.8
Or see this region's nucleotide sequence