Strain Fitness in Shewanella amazonensis SB2B around Sama_0906

Experiment: acetate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntthrA and Sama_0906 overlap by 4 nucleotidesSama_0906 and Sama_0907 are separated by 9 nucleotides Sama_0905: thrA - bifunctional aspartokinase I/homeserine dehydrogenase I (RefSeq), at 1,092,368 to 1,094,833 thrA Sama_0906: Sama_0906 - homoserine kinase (RefSeq), at 1,094,830 to 1,095,774 _0906 Sama_0907: Sama_0907 - threonine synthase (RefSeq), at 1,095,784 to 1,097,070 _0907 Position (kb) 1094 1095 1096Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1093.873 kb on + strand, within thrAat 1093.873 kb on + strand, within thrAat 1094.101 kb on + strand, within thrAat 1094.102 kb on - strand, within thrAat 1094.102 kb on - strand, within thrAat 1094.113 kb on + strand, within thrAat 1094.180 kb on + strand, within thrAat 1094.180 kb on + strand, within thrAat 1094.181 kb on - strand, within thrAat 1094.257 kb on + strand, within thrAat 1094.258 kb on - strand, within thrAat 1094.258 kb on - strand, within thrAat 1094.271 kb on + strand, within thrAat 1094.293 kb on + strand, within thrAat 1094.302 kb on + strand, within thrAat 1094.362 kb on + strand, within thrAat 1094.362 kb on + strand, within thrAat 1094.363 kb on - strand, within thrAat 1094.479 kb on - strand, within thrAat 1094.515 kb on + strand, within thrAat 1094.516 kb on - strand, within thrAat 1094.516 kb on - strand, within thrAat 1094.553 kb on + strand, within thrAat 1094.553 kb on + strand, within thrAat 1094.553 kb on + strand, within thrAat 1094.553 kb on + strand, within thrAat 1094.553 kb on + strand, within thrAat 1094.554 kb on - strand, within thrAat 1094.554 kb on - strand, within thrAat 1094.600 kb on + strandat 1094.638 kb on + strandat 1094.639 kb on - strandat 1094.639 kb on - strandat 1094.639 kb on - strandat 1094.705 kb on + strandat 1094.706 kb on - strandat 1094.714 kb on + strandat 1094.717 kb on + strandat 1094.717 kb on + strandat 1094.717 kb on + strandat 1094.718 kb on - strandat 1094.718 kb on - strandat 1094.737 kb on - strandat 1094.845 kb on + strandat 1094.845 kb on + strandat 1094.846 kb on - strandat 1094.860 kb on - strandat 1094.866 kb on - strandat 1094.866 kb on - strandat 1094.866 kb on - strandat 1094.866 kb on - strandat 1094.876 kb on + strandat 1094.877 kb on - strandat 1094.877 kb on - strandat 1094.877 kb on - strandat 1094.877 kb on - strandat 1094.973 kb on + strand, within Sama_0906at 1094.974 kb on - strand, within Sama_0906at 1094.974 kb on - strand, within Sama_0906at 1094.976 kb on + strand, within Sama_0906at 1094.977 kb on - strand, within Sama_0906at 1095.062 kb on + strand, within Sama_0906at 1095.063 kb on - strand, within Sama_0906at 1095.160 kb on + strand, within Sama_0906at 1095.175 kb on + strand, within Sama_0906at 1095.176 kb on - strand, within Sama_0906at 1095.256 kb on + strand, within Sama_0906at 1095.257 kb on - strand, within Sama_0906at 1095.277 kb on + strand, within Sama_0906at 1095.288 kb on + strand, within Sama_0906at 1095.352 kb on + strand, within Sama_0906at 1095.353 kb on - strand, within Sama_0906at 1095.421 kb on + strand, within Sama_0906at 1095.421 kb on + strand, within Sama_0906at 1095.421 kb on + strand, within Sama_0906at 1095.421 kb on + strand, within Sama_0906at 1095.421 kb on + strand, within Sama_0906at 1095.421 kb on + strand, within Sama_0906at 1095.421 kb on + strand, within Sama_0906at 1095.421 kb on + strand, within Sama_0906at 1095.421 kb on + strand, within Sama_0906at 1095.421 kb on + strand, within Sama_0906at 1095.422 kb on - strand, within Sama_0906at 1095.422 kb on - strand, within Sama_0906at 1095.422 kb on - strand, within Sama_0906at 1095.422 kb on - strand, within Sama_0906at 1095.422 kb on - strand, within Sama_0906at 1095.422 kb on - strand, within Sama_0906at 1095.422 kb on - strand, within Sama_0906at 1095.426 kb on + strand, within Sama_0906at 1095.426 kb on + strand, within Sama_0906at 1095.426 kb on + strand, within Sama_0906at 1095.426 kb on + strand, within Sama_0906at 1095.426 kb on + strand, within Sama_0906at 1095.426 kb on + strand, within Sama_0906at 1095.426 kb on + strand, within Sama_0906at 1095.427 kb on - strand, within Sama_0906at 1095.427 kb on - strand, within Sama_0906at 1095.427 kb on - strand, within Sama_0906at 1095.481 kb on + strand, within Sama_0906at 1095.481 kb on + strand, within Sama_0906at 1095.517 kb on - strand, within Sama_0906at 1095.517 kb on - strand, within Sama_0906at 1095.552 kb on + strand, within Sama_0906at 1095.597 kb on + strand, within Sama_0906at 1095.597 kb on + strand, within Sama_0906at 1095.597 kb on + strand, within Sama_0906at 1095.597 kb on + strand, within Sama_0906at 1095.597 kb on + strand, within Sama_0906at 1095.598 kb on - strand, within Sama_0906at 1095.598 kb on - strand, within Sama_0906at 1095.645 kb on + strand, within Sama_0906at 1095.697 kb on + strandat 1095.698 kb on - strandat 1095.698 kb on - strandat 1095.702 kb on + strandat 1095.702 kb on + strandat 1095.703 kb on - strandat 1095.738 kb on + strandat 1095.758 kb on + strandat 1095.759 kb on - strandat 1095.791 kb on + strandat 1095.793 kb on + strandat 1095.793 kb on + strandat 1095.794 kb on - strandat 1095.801 kb on + strandat 1095.802 kb on - strandat 1095.802 kb on - strandat 1095.885 kb on + strandat 1095.885 kb on + strandat 1095.885 kb on + strandat 1095.923 kb on + strand, within Sama_0907at 1095.923 kb on + strand, within Sama_0907at 1096.009 kb on - strand, within Sama_0907at 1096.018 kb on - strand, within Sama_0907at 1096.018 kb on - strand, within Sama_0907at 1096.018 kb on - strand, within Sama_0907at 1096.018 kb on - strand, within Sama_0907at 1096.043 kb on + strand, within Sama_0907at 1096.057 kb on + strand, within Sama_0907at 1096.213 kb on + strand, within Sama_0907at 1096.213 kb on + strand, within Sama_0907at 1096.213 kb on + strand, within Sama_0907at 1096.213 kb on + strand, within Sama_0907at 1096.214 kb on - strand, within Sama_0907at 1096.214 kb on - strand, within Sama_0907at 1096.214 kb on - strand, within Sama_0907at 1096.287 kb on + strand, within Sama_0907at 1096.287 kb on + strand, within Sama_0907at 1096.288 kb on - strand, within Sama_0907at 1096.288 kb on - strand, within Sama_0907at 1096.290 kb on + strand, within Sama_0907at 1096.422 kb on + strand, within Sama_0907at 1096.453 kb on + strand, within Sama_0907at 1096.763 kb on + strand, within Sama_0907at 1096.763 kb on + strand, within Sama_0907

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate
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1,093,873 + thrA Sama_0905 0.61 -2.2
1,093,873 + thrA Sama_0905 0.61 -2.8
1,094,101 + thrA Sama_0905 0.70 -0.7
1,094,102 - thrA Sama_0905 0.70 -1.9
1,094,102 - thrA Sama_0905 0.70 -1.8
1,094,113 + thrA Sama_0905 0.71 -1.7
1,094,180 + thrA Sama_0905 0.73 -0.8
1,094,180 + thrA Sama_0905 0.73 -0.8
1,094,181 - thrA Sama_0905 0.74 -0.8
1,094,257 + thrA Sama_0905 0.77 -2.5
1,094,258 - thrA Sama_0905 0.77 -1.2
1,094,258 - thrA Sama_0905 0.77 -3.9
1,094,271 + thrA Sama_0905 0.77 -0.7
1,094,293 + thrA Sama_0905 0.78 +0.1
1,094,302 + thrA Sama_0905 0.78 +1.0
1,094,362 + thrA Sama_0905 0.81 +0.5
1,094,362 + thrA Sama_0905 0.81 +0.3
1,094,363 - thrA Sama_0905 0.81 -3.6
1,094,479 - thrA Sama_0905 0.86 -1.8
1,094,515 + thrA Sama_0905 0.87 -1.3
1,094,516 - thrA Sama_0905 0.87 -3.6
1,094,516 - thrA Sama_0905 0.87 -2.0
1,094,553 + thrA Sama_0905 0.89 -0.4
1,094,553 + thrA Sama_0905 0.89 +0.1
1,094,553 + thrA Sama_0905 0.89 -0.3
1,094,553 + thrA Sama_0905 0.89 +1.5
1,094,553 + thrA Sama_0905 0.89 +2.0
1,094,554 - thrA Sama_0905 0.89 -1.6
1,094,554 - thrA Sama_0905 0.89 -3.7
1,094,600 + -0.2
1,094,638 + +0.4
1,094,639 - -2.9
1,094,639 - -0.8
1,094,639 - -2.1
1,094,705 + -0.4
1,094,706 - -1.7
1,094,714 + +0.7
1,094,717 + +0.8
1,094,717 + +0.5
1,094,717 + -0.1
1,094,718 - -1.8
1,094,718 - -2.2
1,094,737 - -1.2
1,094,845 + -4.1
1,094,845 + -0.2
1,094,846 - -1.8
1,094,860 - -2.1
1,094,866 - -2.5
1,094,866 - -3.9
1,094,866 - -3.3
1,094,866 - -2.8
1,094,876 + -2.8
1,094,877 - -2.2
1,094,877 - -2.3
1,094,877 - -2.6
1,094,877 - -3.0
1,094,973 + Sama_0906 0.15 -2.5
1,094,974 - Sama_0906 0.15 -2.8
1,094,974 - Sama_0906 0.15 -1.2
1,094,976 + Sama_0906 0.15 -2.0
1,094,977 - Sama_0906 0.16 -3.9
1,095,062 + Sama_0906 0.25 -2.5
1,095,063 - Sama_0906 0.25 -1.8
1,095,160 + Sama_0906 0.35 -3.5
1,095,175 + Sama_0906 0.37 -2.0
1,095,176 - Sama_0906 0.37 -2.0
1,095,256 + Sama_0906 0.45 -3.0
1,095,257 - Sama_0906 0.45 -0.8
1,095,277 + Sama_0906 0.47 -2.3
1,095,288 + Sama_0906 0.48 -3.8
1,095,352 + Sama_0906 0.55 -3.6
1,095,353 - Sama_0906 0.55 +0.8
1,095,421 + Sama_0906 0.63 -4.5
1,095,421 + Sama_0906 0.63 -2.0
1,095,421 + Sama_0906 0.63 -2.6
1,095,421 + Sama_0906 0.63 -3.5
1,095,421 + Sama_0906 0.63 -3.6
1,095,421 + Sama_0906 0.63 -0.8
1,095,421 + Sama_0906 0.63 -1.5
1,095,421 + Sama_0906 0.63 -2.0
1,095,421 + Sama_0906 0.63 -2.6
1,095,421 + Sama_0906 0.63 -4.4
1,095,422 - Sama_0906 0.63 -1.8
1,095,422 - Sama_0906 0.63 -2.7
1,095,422 - Sama_0906 0.63 -2.0
1,095,422 - Sama_0906 0.63 -2.5
1,095,422 - Sama_0906 0.63 -3.4
1,095,422 - Sama_0906 0.63 -2.5
1,095,422 - Sama_0906 0.63 -3.3
1,095,426 + Sama_0906 0.63 -2.8
1,095,426 + Sama_0906 0.63 -2.3
1,095,426 + Sama_0906 0.63 -1.8
1,095,426 + Sama_0906 0.63 -1.8
1,095,426 + Sama_0906 0.63 -0.8
1,095,426 + Sama_0906 0.63 -3.5
1,095,426 + Sama_0906 0.63 -4.3
1,095,427 - Sama_0906 0.63 -4.2
1,095,427 - Sama_0906 0.63 +0.2
1,095,427 - Sama_0906 0.63 -2.8
1,095,481 + Sama_0906 0.69 -2.2
1,095,481 + Sama_0906 0.69 -3.4
1,095,517 - Sama_0906 0.73 +0.8
1,095,517 - Sama_0906 0.73 -2.6
1,095,552 + Sama_0906 0.76 -3.3
1,095,597 + Sama_0906 0.81 -1.9
1,095,597 + Sama_0906 0.81 -3.1
1,095,597 + Sama_0906 0.81 -4.0
1,095,597 + Sama_0906 0.81 -2.3
1,095,597 + Sama_0906 0.81 -2.0
1,095,598 - Sama_0906 0.81 -3.8
1,095,598 - Sama_0906 0.81 -1.5
1,095,645 + Sama_0906 0.86 -3.9
1,095,697 + -1.8
1,095,698 - -1.8
1,095,698 - -2.8
1,095,702 + -2.3
1,095,702 + -1.8
1,095,703 - -2.2
1,095,738 + -2.3
1,095,758 + -2.2
1,095,759 - -3.1
1,095,791 + -2.3
1,095,793 + -1.2
1,095,793 + -3.4
1,095,794 - -2.3
1,095,801 + -4.3
1,095,802 - -2.5
1,095,802 - -1.2
1,095,885 + -2.0
1,095,885 + -2.6
1,095,885 + -1.5
1,095,923 + Sama_0907 0.11 -0.2
1,095,923 + Sama_0907 0.11 -3.7
1,096,009 - Sama_0907 0.17 -2.5
1,096,018 - Sama_0907 0.18 -4.2
1,096,018 - Sama_0907 0.18 -0.2
1,096,018 - Sama_0907 0.18 -2.0
1,096,018 - Sama_0907 0.18 -3.1
1,096,043 + Sama_0907 0.20 -1.5
1,096,057 + Sama_0907 0.21 -3.7
1,096,213 + Sama_0907 0.33 -4.0
1,096,213 + Sama_0907 0.33 -3.4
1,096,213 + Sama_0907 0.33 -2.2
1,096,213 + Sama_0907 0.33 -3.0
1,096,214 - Sama_0907 0.33 -2.3
1,096,214 - Sama_0907 0.33 -2.6
1,096,214 - Sama_0907 0.33 -3.0
1,096,287 + Sama_0907 0.39 -3.5
1,096,287 + Sama_0907 0.39 -1.8
1,096,288 - Sama_0907 0.39 -2.0
1,096,288 - Sama_0907 0.39 -4.0
1,096,290 + Sama_0907 0.39 -1.9
1,096,422 + Sama_0907 0.50 -2.3
1,096,453 + Sama_0907 0.52 -4.5
1,096,763 + Sama_0907 0.76 -2.9
1,096,763 + Sama_0907 0.76 -0.8

Or see this region's nucleotide sequence