Experiment: acetate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0761 and cobT are separated by 9 nucleotides cobT and Sama_0763 are separated by 13 nucleotides Sama_0763 and Sama_0764 overlap by 4 nucleotides
Sama_0761: Sama_0761 - iron-compound ABC transporter, permease protein (RefSeq), at 944,076 to 945,119
_0761
Sama_0762: cobT - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (RefSeq), at 945,129 to 946,163
cobT
Sama_0763: Sama_0763 - cobalamin 5'-phosphate synthase (RefSeq), at 946,177 to 946,959
_0763
Sama_0764: Sama_0764 - cobinamide kinase/cobinamide phosphate guanylyltransferase (RefSeq), at 946,956 to 947,501
_0764
Position (kb) 945
946
947 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 944.139 kb on - strand at 944.139 kb on - strand at 944.220 kb on + strand, within Sama_0761 at 944.228 kb on + strand, within Sama_0761 at 944.228 kb on + strand, within Sama_0761 at 944.228 kb on + strand, within Sama_0761 at 944.228 kb on + strand, within Sama_0761 at 944.229 kb on - strand, within Sama_0761 at 944.263 kb on - strand, within Sama_0761 at 944.277 kb on - strand, within Sama_0761 at 944.277 kb on - strand, within Sama_0761 at 944.305 kb on + strand, within Sama_0761 at 944.305 kb on + strand, within Sama_0761 at 944.306 kb on - strand, within Sama_0761 at 944.391 kb on + strand, within Sama_0761 at 944.438 kb on - strand, within Sama_0761 at 944.453 kb on + strand, within Sama_0761 at 944.453 kb on + strand, within Sama_0761 at 944.454 kb on - strand, within Sama_0761 at 944.454 kb on - strand, within Sama_0761 at 944.454 kb on - strand, within Sama_0761 at 944.454 kb on - strand, within Sama_0761 at 944.465 kb on - strand, within Sama_0761 at 944.507 kb on + strand, within Sama_0761 at 944.507 kb on + strand, within Sama_0761 at 944.508 kb on - strand, within Sama_0761 at 944.508 kb on - strand, within Sama_0761 at 944.508 kb on - strand, within Sama_0761 at 944.508 kb on - strand, within Sama_0761 at 944.519 kb on - strand, within Sama_0761 at 944.532 kb on - strand, within Sama_0761 at 944.629 kb on + strand, within Sama_0761 at 944.650 kb on + strand, within Sama_0761 at 944.650 kb on + strand, within Sama_0761 at 944.651 kb on - strand, within Sama_0761 at 944.665 kb on + strand, within Sama_0761 at 944.665 kb on + strand, within Sama_0761 at 944.666 kb on - strand, within Sama_0761 at 944.666 kb on - strand, within Sama_0761 at 944.828 kb on + strand, within Sama_0761 at 944.829 kb on - strand, within Sama_0761 at 944.840 kb on + strand, within Sama_0761 at 944.840 kb on + strand, within Sama_0761 at 944.840 kb on + strand, within Sama_0761 at 944.841 kb on - strand, within Sama_0761 at 944.882 kb on - strand, within Sama_0761 at 944.882 kb on - strand, within Sama_0761 at 945.059 kb on + strand at 945.117 kb on + strand at 945.118 kb on - strand at 945.137 kb on + strand at 945.137 kb on + strand at 945.138 kb on - strand at 945.139 kb on + strand at 945.139 kb on + strand at 945.139 kb on + strand at 945.139 kb on + strand at 945.139 kb on + strand at 945.139 kb on + strand at 945.139 kb on + strand at 945.139 kb on + strand at 945.191 kb on + strand at 945.192 kb on - strand at 945.192 kb on - strand at 945.295 kb on + strand, within cobT at 945.295 kb on + strand, within cobT at 945.296 kb on - strand, within cobT at 945.296 kb on - strand, within cobT at 945.296 kb on - strand, within cobT at 945.314 kb on + strand, within cobT at 945.315 kb on - strand, within cobT at 945.332 kb on - strand, within cobT at 945.332 kb on - strand, within cobT at 945.353 kb on - strand, within cobT at 945.449 kb on + strand, within cobT at 945.449 kb on + strand, within cobT at 945.644 kb on + strand, within cobT at 945.644 kb on + strand, within cobT at 945.644 kb on + strand, within cobT at 945.645 kb on - strand, within cobT at 945.645 kb on - strand, within cobT at 945.645 kb on - strand, within cobT at 945.645 kb on - strand, within cobT at 945.645 kb on - strand, within cobT at 945.645 kb on - strand, within cobT at 945.737 kb on + strand, within cobT at 945.738 kb on - strand, within cobT at 945.785 kb on + strand, within cobT at 945.785 kb on + strand, within cobT at 945.786 kb on - strand, within cobT at 945.902 kb on + strand, within cobT at 945.903 kb on - strand, within cobT at 945.903 kb on - strand, within cobT at 945.957 kb on + strand, within cobT at 945.957 kb on + strand, within cobT at 945.957 kb on + strand, within cobT at 945.957 kb on + strand, within cobT at 945.957 kb on + strand, within cobT at 945.957 kb on + strand, within cobT at 945.957 kb on + strand, within cobT at 945.958 kb on - strand, within cobT at 945.958 kb on - strand, within cobT at 945.962 kb on + strand, within cobT at 945.962 kb on + strand, within cobT at 945.962 kb on + strand, within cobT at 945.963 kb on - strand, within cobT at 945.963 kb on - strand, within cobT at 945.963 kb on - strand, within cobT at 945.963 kb on - strand, within cobT at 945.963 kb on - strand, within cobT at 946.013 kb on + strand, within cobT at 946.013 kb on + strand, within cobT at 946.013 kb on + strand, within cobT at 946.013 kb on + strand, within cobT at 946.014 kb on - strand, within cobT at 946.014 kb on - strand, within cobT at 946.014 kb on - strand, within cobT at 946.030 kb on + strand, within cobT at 946.044 kb on - strand, within cobT at 946.061 kb on + strand at 946.062 kb on - strand at 946.062 kb on - strand at 946.062 kb on + strand at 946.110 kb on + strand at 946.111 kb on - strand at 946.145 kb on + strand at 946.153 kb on + strand at 946.154 kb on - strand at 946.154 kb on - strand at 946.176 kb on + strand at 946.176 kb on + strand at 946.176 kb on + strand at 946.176 kb on + strand at 946.176 kb on + strand at 946.177 kb on - strand at 946.177 kb on - strand at 946.177 kb on - strand at 946.177 kb on - strand at 946.177 kb on - strand at 946.177 kb on - strand at 946.177 kb on - strand at 946.177 kb on - strand at 946.177 kb on - strand at 946.188 kb on + strand at 946.230 kb on + strand at 946.250 kb on + strand at 946.262 kb on - strand, within Sama_0763 at 946.278 kb on - strand, within Sama_0763 at 946.294 kb on + strand, within Sama_0763 at 946.294 kb on + strand, within Sama_0763 at 946.294 kb on + strand, within Sama_0763 at 946.359 kb on + strand, within Sama_0763 at 946.359 kb on + strand, within Sama_0763 at 946.485 kb on + strand, within Sama_0763 at 946.485 kb on + strand, within Sama_0763 at 946.485 kb on + strand, within Sama_0763 at 946.485 kb on + strand, within Sama_0763 at 946.485 kb on + strand, within Sama_0763 at 946.486 kb on - strand, within Sama_0763 at 946.522 kb on + strand, within Sama_0763 at 946.522 kb on + strand, within Sama_0763 at 946.523 kb on - strand, within Sama_0763 at 946.523 kb on - strand, within Sama_0763 at 946.629 kb on + strand, within Sama_0763 at 946.630 kb on - strand, within Sama_0763 at 946.630 kb on - strand, within Sama_0763 at 946.634 kb on + strand, within Sama_0763 at 946.634 kb on + strand, within Sama_0763 at 946.635 kb on - strand, within Sama_0763 at 946.656 kb on + strand, within Sama_0763 at 946.657 kb on - strand, within Sama_0763 at 946.657 kb on - strand, within Sama_0763 at 946.671 kb on + strand, within Sama_0763 at 946.671 kb on + strand, within Sama_0763 at 946.671 kb on + strand, within Sama_0763 at 946.671 kb on + strand, within Sama_0763 at 946.671 kb on + strand, within Sama_0763 at 946.671 kb on + strand, within Sama_0763 at 946.671 kb on + strand, within Sama_0763 at 946.671 kb on + strand, within Sama_0763 at 946.671 kb on + strand, within Sama_0763 at 946.671 kb on + strand, within Sama_0763 at 946.672 kb on - strand, within Sama_0763 at 946.672 kb on - strand, within Sama_0763 at 946.672 kb on - strand, within Sama_0763 at 946.672 kb on - strand, within Sama_0763 at 946.675 kb on + strand, within Sama_0763 at 946.675 kb on + strand, within Sama_0763 at 946.675 kb on + strand, within Sama_0763 at 946.675 kb on + strand, within Sama_0763 at 946.675 kb on + strand, within Sama_0763 at 946.675 kb on + strand, within Sama_0763 at 946.675 kb on + strand, within Sama_0763 at 946.675 kb on + strand, within Sama_0763 at 946.676 kb on - strand, within Sama_0763 at 946.676 kb on - strand, within Sama_0763 at 946.676 kb on - strand, within Sama_0763 at 946.676 kb on - strand, within Sama_0763 at 946.676 kb on - strand, within Sama_0763 at 946.676 kb on - strand, within Sama_0763 at 946.676 kb on - strand, within Sama_0763 at 946.676 kb on - strand, within Sama_0763 at 946.749 kb on - strand, within Sama_0763 at 946.808 kb on + strand, within Sama_0763 at 946.809 kb on - strand, within Sama_0763 at 946.875 kb on + strand, within Sama_0763 at 946.924 kb on + strand at 946.924 kb on + strand at 946.924 kb on + strand at 946.924 kb on + strand at 946.924 kb on + strand at 946.924 kb on + strand at 946.925 kb on - strand at 946.925 kb on - strand at 946.937 kb on + strand at 946.938 kb on - strand at 946.938 kb on - strand at 946.938 kb on - strand at 947.043 kb on + strand, within Sama_0764 at 947.044 kb on - strand, within Sama_0764 at 947.044 kb on - strand, within Sama_0764
Per-strain Table
Position Strand Gene LocusTag Fraction acetate remove 944,139 - -2.9 944,139 - -2.1 944,220 + Sama_0761 0.14 -0.4 944,228 + Sama_0761 0.15 -0.7 944,228 + Sama_0761 0.15 -2.1 944,228 + Sama_0761 0.15 -2.8 944,228 + Sama_0761 0.15 -2.1 944,229 - Sama_0761 0.15 -1.7 944,263 - Sama_0761 0.18 -2.3 944,277 - Sama_0761 0.19 -3.0 944,277 - Sama_0761 0.19 -2.1 944,305 + Sama_0761 0.22 -1.7 944,305 + Sama_0761 0.22 -1.7 944,306 - Sama_0761 0.22 -2.8 944,391 + Sama_0761 0.30 -3.1 944,438 - Sama_0761 0.35 -1.1 944,453 + Sama_0761 0.36 -4.1 944,453 + Sama_0761 0.36 -3.7 944,454 - Sama_0761 0.36 -1.4 944,454 - Sama_0761 0.36 -3.1 944,454 - Sama_0761 0.36 -2.7 944,454 - Sama_0761 0.36 -1.9 944,465 - Sama_0761 0.37 -3.2 944,507 + Sama_0761 0.41 -1.7 944,507 + Sama_0761 0.41 -3.4 944,508 - Sama_0761 0.41 +0.9 944,508 - Sama_0761 0.41 -1.7 944,508 - Sama_0761 0.41 -2.6 944,508 - Sama_0761 0.41 -2.6 944,519 - Sama_0761 0.42 -1.9 944,532 - Sama_0761 0.44 -1.9 944,629 + Sama_0761 0.53 -4.2 944,650 + Sama_0761 0.55 -1.8 944,650 + Sama_0761 0.55 -2.9 944,651 - Sama_0761 0.55 -4.0 944,665 + Sama_0761 0.56 -2.6 944,665 + Sama_0761 0.56 -2.9 944,666 - Sama_0761 0.57 -2.7 944,666 - Sama_0761 0.57 -4.5 944,828 + Sama_0761 0.72 -2.7 944,829 - Sama_0761 0.72 -2.6 944,840 + Sama_0761 0.73 -3.7 944,840 + Sama_0761 0.73 -3.6 944,840 + Sama_0761 0.73 -1.1 944,841 - Sama_0761 0.73 -2.1 944,882 - Sama_0761 0.77 -3.0 944,882 - Sama_0761 0.77 -1.1 945,059 + -1.4 945,117 + -1.3 945,118 - -0.2 945,137 + -0.1 945,137 + -0.3 945,138 - -0.1 945,139 + +0.5 945,139 + +0.1 945,139 + -0.4 945,139 + -0.2 945,139 + -0.1 945,139 + -1.9 945,139 + -0.4 945,139 + +0.9 945,191 + +0.1 945,192 - -2.3 945,192 - -0.1 945,295 + cobT Sama_0762 0.16 -0.0 945,295 + cobT Sama_0762 0.16 +0.4 945,296 - cobT Sama_0762 0.16 -0.3 945,296 - cobT Sama_0762 0.16 -0.0 945,296 - cobT Sama_0762 0.16 +0.4 945,314 + cobT Sama_0762 0.18 -0.1 945,315 - cobT Sama_0762 0.18 +0.1 945,332 - cobT Sama_0762 0.20 -1.0 945,332 - cobT Sama_0762 0.20 -0.2 945,353 - cobT Sama_0762 0.22 +0.5 945,449 + cobT Sama_0762 0.31 -0.5 945,449 + cobT Sama_0762 0.31 +0.1 945,644 + cobT Sama_0762 0.50 -0.2 945,644 + cobT Sama_0762 0.50 -1.7 945,644 + cobT Sama_0762 0.50 -0.9 945,645 - cobT Sama_0762 0.50 +0.2 945,645 - cobT Sama_0762 0.50 -0.4 945,645 - cobT Sama_0762 0.50 -0.7 945,645 - cobT Sama_0762 0.50 +0.7 945,645 - cobT Sama_0762 0.50 +0.9 945,645 - cobT Sama_0762 0.50 +0.6 945,737 + cobT Sama_0762 0.59 -1.1 945,738 - cobT Sama_0762 0.59 +0.7 945,785 + cobT Sama_0762 0.63 -0.7 945,785 + cobT Sama_0762 0.63 +0.8 945,786 - cobT Sama_0762 0.63 +0.5 945,902 + cobT Sama_0762 0.75 -0.3 945,903 - cobT Sama_0762 0.75 -1.6 945,903 - cobT Sama_0762 0.75 -0.5 945,957 + cobT Sama_0762 0.80 +1.1 945,957 + cobT Sama_0762 0.80 -1.1 945,957 + cobT Sama_0762 0.80 -0.0 945,957 + cobT Sama_0762 0.80 +0.3 945,957 + cobT Sama_0762 0.80 +0.3 945,957 + cobT Sama_0762 0.80 -2.1 945,957 + cobT Sama_0762 0.80 -2.1 945,958 - cobT Sama_0762 0.80 +0.1 945,958 - cobT Sama_0762 0.80 +1.5 945,962 + cobT Sama_0762 0.80 +0.5 945,962 + cobT Sama_0762 0.80 +0.2 945,962 + cobT Sama_0762 0.80 -0.9 945,963 - cobT Sama_0762 0.81 +0.4 945,963 - cobT Sama_0762 0.81 +0.2 945,963 - cobT Sama_0762 0.81 -0.7 945,963 - cobT Sama_0762 0.81 +0.6 945,963 - cobT Sama_0762 0.81 -1.1 946,013 + cobT Sama_0762 0.85 -1.1 946,013 + cobT Sama_0762 0.85 -0.1 946,013 + cobT Sama_0762 0.85 -0.6 946,013 + cobT Sama_0762 0.85 -1.1 946,014 - cobT Sama_0762 0.86 +0.5 946,014 - cobT Sama_0762 0.86 -1.1 946,014 - cobT Sama_0762 0.86 -0.6 946,030 + cobT Sama_0762 0.87 +1.9 946,044 - cobT Sama_0762 0.88 +0.5 946,061 + -0.2 946,062 - -0.2 946,062 - -0.1 946,062 + -0.4 946,110 + +0.2 946,111 - -0.4 946,145 + +1.5 946,153 + +0.6 946,154 - -0.3 946,154 - -0.7 946,176 + -0.3 946,176 + -2.4 946,176 + -1.9 946,176 + +0.6 946,176 + -0.0 946,177 - -0.1 946,177 - -0.0 946,177 - -0.1 946,177 - -0.6 946,177 - +0.2 946,177 - +0.9 946,177 - +1.1 946,177 - +0.2 946,177 - +0.3 946,188 + +0.1 946,230 + +0.0 946,250 + +0.3 946,262 - Sama_0763 0.11 +0.8 946,278 - Sama_0763 0.13 -1.2 946,294 + Sama_0763 0.15 +0.2 946,294 + Sama_0763 0.15 +0.5 946,294 + Sama_0763 0.15 +0.7 946,359 + Sama_0763 0.23 +0.7 946,359 + Sama_0763 0.23 +0.9 946,485 + Sama_0763 0.39 -0.3 946,485 + Sama_0763 0.39 +1.3 946,485 + Sama_0763 0.39 +0.1 946,485 + Sama_0763 0.39 -0.4 946,485 + Sama_0763 0.39 -0.2 946,486 - Sama_0763 0.39 -0.8 946,522 + Sama_0763 0.44 +1.3 946,522 + Sama_0763 0.44 +0.6 946,523 - Sama_0763 0.44 -0.1 946,523 - Sama_0763 0.44 +0.7 946,629 + Sama_0763 0.58 -0.9 946,630 - Sama_0763 0.58 +1.7 946,630 - Sama_0763 0.58 -0.1 946,634 + Sama_0763 0.58 -0.7 946,634 + Sama_0763 0.58 -0.1 946,635 - Sama_0763 0.58 +0.3 946,656 + Sama_0763 0.61 +0.2 946,657 - Sama_0763 0.61 +0.1 946,657 - Sama_0763 0.61 +0.7 946,671 + Sama_0763 0.63 +0.5 946,671 + Sama_0763 0.63 -1.6 946,671 + Sama_0763 0.63 +0.2 946,671 + Sama_0763 0.63 +1.0 946,671 + Sama_0763 0.63 -0.4 946,671 + Sama_0763 0.63 -0.1 946,671 + Sama_0763 0.63 +1.2 946,671 + Sama_0763 0.63 -0.3 946,671 + Sama_0763 0.63 -0.3 946,671 + Sama_0763 0.63 +1.1 946,672 - Sama_0763 0.63 +0.7 946,672 - Sama_0763 0.63 +1.4 946,672 - Sama_0763 0.63 +0.3 946,672 - Sama_0763 0.63 -0.1 946,675 + Sama_0763 0.64 +1.1 946,675 + Sama_0763 0.64 +0.5 946,675 + Sama_0763 0.64 -1.1 946,675 + Sama_0763 0.64 +0.4 946,675 + Sama_0763 0.64 +2.5 946,675 + Sama_0763 0.64 -0.8 946,675 + Sama_0763 0.64 +1.7 946,675 + Sama_0763 0.64 +0.3 946,676 - Sama_0763 0.64 +0.8 946,676 - Sama_0763 0.64 +1.5 946,676 - Sama_0763 0.64 -1.2 946,676 - Sama_0763 0.64 +0.5 946,676 - Sama_0763 0.64 -0.7 946,676 - Sama_0763 0.64 -2.1 946,676 - Sama_0763 0.64 -0.1 946,676 - Sama_0763 0.64 -0.5 946,749 - Sama_0763 0.73 -0.4 946,808 + Sama_0763 0.81 -0.1 946,809 - Sama_0763 0.81 +0.5 946,875 + Sama_0763 0.89 -0.9 946,924 + -0.0 946,924 + +0.9 946,924 + -0.1 946,924 + +0.3 946,924 + -0.3 946,924 + -1.6 946,925 - +0.8 946,925 - -0.7 946,937 + -0.0 946,938 - -1.3 946,938 - +0.1 946,938 - +0.4 947,043 + Sama_0764 0.16 -0.7 947,044 - Sama_0764 0.16 +2.0 947,044 - Sama_0764 0.16 +0.1
Or see this region's nucleotide sequence