Experiment: acetate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0760 and Sama_0761 overlap by 4 nucleotides Sama_0761 and cobT are separated by 9 nucleotides
Sama_0760: Sama_0760 - iron-compound ABC transporter, ATP-binding protein, putative (RefSeq), at 943,264 to 944,079
_0760
Sama_0761: Sama_0761 - iron-compound ABC transporter, permease protein (RefSeq), at 944,076 to 945,119
_0761
Sama_0762: cobT - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (RefSeq), at 945,129 to 946,163
cobT
Position (kb) 944
945
946 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 943.078 kb on + strand at 943.078 kb on + strand at 943.078 kb on + strand at 943.078 kb on + strand at 943.078 kb on + strand at 943.078 kb on + strand at 943.078 kb on + strand at 943.078 kb on + strand at 943.078 kb on + strand at 943.078 kb on + strand at 943.078 kb on + strand at 943.079 kb on - strand at 943.079 kb on - strand at 943.079 kb on - strand at 943.079 kb on - strand at 943.079 kb on - strand at 943.079 kb on - strand at 943.079 kb on - strand at 943.079 kb on - strand at 943.079 kb on - strand at 943.083 kb on + strand at 943.083 kb on + strand at 943.083 kb on + strand at 943.083 kb on + strand at 943.083 kb on + strand at 943.084 kb on - strand at 943.084 kb on - strand at 943.084 kb on - strand at 943.084 kb on - strand at 943.084 kb on - strand at 943.088 kb on + strand at 943.088 kb on + strand at 943.088 kb on + strand at 943.089 kb on - strand at 943.089 kb on - strand at 943.089 kb on - strand at 943.141 kb on - strand at 943.141 kb on - strand at 943.141 kb on - strand at 943.162 kb on - strand at 943.198 kb on + strand at 943.198 kb on + strand at 943.198 kb on + strand at 943.199 kb on - strand at 943.199 kb on - strand at 943.199 kb on - strand at 943.199 kb on - strand at 943.250 kb on + strand at 943.250 kb on + strand at 943.250 kb on + strand at 943.251 kb on - strand at 943.251 kb on - strand at 943.304 kb on + strand at 943.305 kb on - strand at 943.360 kb on + strand, within Sama_0760 at 943.360 kb on + strand, within Sama_0760 at 943.360 kb on + strand, within Sama_0760 at 943.361 kb on - strand, within Sama_0760 at 943.361 kb on - strand, within Sama_0760 at 943.422 kb on + strand, within Sama_0760 at 943.445 kb on + strand, within Sama_0760 at 943.445 kb on + strand, within Sama_0760 at 943.445 kb on + strand, within Sama_0760 at 943.445 kb on + strand, within Sama_0760 at 943.445 kb on + strand, within Sama_0760 at 943.445 kb on + strand, within Sama_0760 at 943.445 kb on + strand, within Sama_0760 at 943.446 kb on - strand, within Sama_0760 at 943.446 kb on - strand, within Sama_0760 at 943.464 kb on + strand, within Sama_0760 at 943.474 kb on + strand, within Sama_0760 at 943.475 kb on - strand, within Sama_0760 at 943.572 kb on + strand, within Sama_0760 at 943.623 kb on + strand, within Sama_0760 at 943.623 kb on + strand, within Sama_0760 at 943.624 kb on - strand, within Sama_0760 at 943.660 kb on + strand, within Sama_0760 at 943.749 kb on + strand, within Sama_0760 at 943.824 kb on + strand, within Sama_0760 at 943.824 kb on + strand, within Sama_0760 at 943.939 kb on - strand, within Sama_0760 at 943.961 kb on + strand, within Sama_0760 at 943.977 kb on + strand, within Sama_0760 at 943.977 kb on + strand, within Sama_0760 at 943.977 kb on + strand, within Sama_0760 at 943.978 kb on - strand, within Sama_0760 at 943.978 kb on - strand, within Sama_0760 at 943.978 kb on - strand, within Sama_0760 at 943.978 kb on - strand, within Sama_0760 at 943.983 kb on + strand, within Sama_0760 at 943.983 kb on + strand, within Sama_0760 at 943.983 kb on + strand, within Sama_0760 at 943.983 kb on + strand, within Sama_0760 at 943.984 kb on - strand, within Sama_0760 at 943.984 kb on - strand, within Sama_0760 at 944.020 kb on + strand at 944.020 kb on + strand at 944.020 kb on + strand at 944.020 kb on + strand at 944.021 kb on - strand at 944.021 kb on - strand at 944.023 kb on + strand at 944.023 kb on + strand at 944.024 kb on - strand at 944.024 kb on - strand at 944.024 kb on - strand at 944.024 kb on - strand at 944.026 kb on + strand at 944.026 kb on + strand at 944.026 kb on + strand at 944.026 kb on + strand at 944.026 kb on + strand at 944.026 kb on + strand at 944.026 kb on + strand at 944.027 kb on - strand at 944.027 kb on - strand at 944.027 kb on - strand at 944.027 kb on - strand at 944.027 kb on - strand at 944.027 kb on - strand at 944.027 kb on - strand at 944.027 kb on - strand at 944.027 kb on - strand at 944.032 kb on + strand at 944.032 kb on + strand at 944.032 kb on + strand at 944.032 kb on + strand at 944.033 kb on - strand at 944.033 kb on - strand at 944.033 kb on - strand at 944.033 kb on - strand at 944.033 kb on - strand at 944.033 kb on - strand at 944.033 kb on - strand at 944.098 kb on + strand at 944.098 kb on + strand at 944.099 kb on - strand at 944.139 kb on - strand at 944.139 kb on - strand at 944.220 kb on + strand, within Sama_0761 at 944.228 kb on + strand, within Sama_0761 at 944.228 kb on + strand, within Sama_0761 at 944.228 kb on + strand, within Sama_0761 at 944.228 kb on + strand, within Sama_0761 at 944.229 kb on - strand, within Sama_0761 at 944.263 kb on - strand, within Sama_0761 at 944.277 kb on - strand, within Sama_0761 at 944.277 kb on - strand, within Sama_0761 at 944.305 kb on + strand, within Sama_0761 at 944.305 kb on + strand, within Sama_0761 at 944.306 kb on - strand, within Sama_0761 at 944.391 kb on + strand, within Sama_0761 at 944.438 kb on - strand, within Sama_0761 at 944.453 kb on + strand, within Sama_0761 at 944.453 kb on + strand, within Sama_0761 at 944.454 kb on - strand, within Sama_0761 at 944.454 kb on - strand, within Sama_0761 at 944.454 kb on - strand, within Sama_0761 at 944.454 kb on - strand, within Sama_0761 at 944.465 kb on - strand, within Sama_0761 at 944.507 kb on + strand, within Sama_0761 at 944.507 kb on + strand, within Sama_0761 at 944.508 kb on - strand, within Sama_0761 at 944.508 kb on - strand, within Sama_0761 at 944.508 kb on - strand, within Sama_0761 at 944.508 kb on - strand, within Sama_0761 at 944.519 kb on - strand, within Sama_0761 at 944.532 kb on - strand, within Sama_0761 at 944.629 kb on + strand, within Sama_0761 at 944.650 kb on + strand, within Sama_0761 at 944.650 kb on + strand, within Sama_0761 at 944.651 kb on - strand, within Sama_0761 at 944.665 kb on + strand, within Sama_0761 at 944.665 kb on + strand, within Sama_0761 at 944.666 kb on - strand, within Sama_0761 at 944.666 kb on - strand, within Sama_0761 at 944.828 kb on + strand, within Sama_0761 at 944.829 kb on - strand, within Sama_0761 at 944.840 kb on + strand, within Sama_0761 at 944.840 kb on + strand, within Sama_0761 at 944.840 kb on + strand, within Sama_0761 at 944.841 kb on - strand, within Sama_0761 at 944.882 kb on - strand, within Sama_0761 at 944.882 kb on - strand, within Sama_0761 at 945.059 kb on + strand at 945.117 kb on + strand at 945.118 kb on - strand at 945.137 kb on + strand at 945.137 kb on + strand at 945.138 kb on - strand at 945.139 kb on + strand at 945.139 kb on + strand at 945.139 kb on + strand at 945.139 kb on + strand at 945.139 kb on + strand at 945.139 kb on + strand at 945.139 kb on + strand at 945.139 kb on + strand at 945.191 kb on + strand at 945.192 kb on - strand at 945.192 kb on - strand at 945.295 kb on + strand, within cobT at 945.295 kb on + strand, within cobT at 945.296 kb on - strand, within cobT at 945.296 kb on - strand, within cobT at 945.296 kb on - strand, within cobT at 945.314 kb on + strand, within cobT at 945.315 kb on - strand, within cobT at 945.332 kb on - strand, within cobT at 945.332 kb on - strand, within cobT at 945.353 kb on - strand, within cobT at 945.449 kb on + strand, within cobT at 945.449 kb on + strand, within cobT at 945.644 kb on + strand, within cobT at 945.644 kb on + strand, within cobT at 945.644 kb on + strand, within cobT at 945.645 kb on - strand, within cobT at 945.645 kb on - strand, within cobT at 945.645 kb on - strand, within cobT at 945.645 kb on - strand, within cobT at 945.645 kb on - strand, within cobT at 945.645 kb on - strand, within cobT at 945.737 kb on + strand, within cobT at 945.738 kb on - strand, within cobT at 945.785 kb on + strand, within cobT at 945.785 kb on + strand, within cobT at 945.786 kb on - strand, within cobT at 945.902 kb on + strand, within cobT at 945.903 kb on - strand, within cobT at 945.903 kb on - strand, within cobT at 945.957 kb on + strand, within cobT at 945.957 kb on + strand, within cobT at 945.957 kb on + strand, within cobT at 945.957 kb on + strand, within cobT at 945.957 kb on + strand, within cobT at 945.957 kb on + strand, within cobT at 945.957 kb on + strand, within cobT at 945.958 kb on - strand, within cobT at 945.958 kb on - strand, within cobT at 945.962 kb on + strand, within cobT at 945.962 kb on + strand, within cobT at 945.962 kb on + strand, within cobT at 945.963 kb on - strand, within cobT at 945.963 kb on - strand, within cobT at 945.963 kb on - strand, within cobT at 945.963 kb on - strand, within cobT at 945.963 kb on - strand, within cobT at 946.013 kb on + strand, within cobT at 946.013 kb on + strand, within cobT at 946.013 kb on + strand, within cobT at 946.013 kb on + strand, within cobT at 946.014 kb on - strand, within cobT at 946.014 kb on - strand, within cobT at 946.014 kb on - strand, within cobT at 946.030 kb on + strand, within cobT at 946.044 kb on - strand, within cobT at 946.061 kb on + strand at 946.062 kb on - strand at 946.062 kb on - strand at 946.062 kb on + strand at 946.110 kb on + strand at 946.111 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate remove 943,078 + +1.5 943,078 + -0.2 943,078 + -0.2 943,078 + -0.0 943,078 + +0.4 943,078 + -0.2 943,078 + -0.4 943,078 + -0.6 943,078 + +0.0 943,078 + +0.3 943,078 + +2.1 943,079 - -2.4 943,079 - -1.1 943,079 - -1.7 943,079 - -1.7 943,079 - -0.7 943,079 - -1.6 943,079 - -2.3 943,079 - -3.1 943,079 - -1.1 943,083 + -0.3 943,083 + -0.8 943,083 + +1.9 943,083 + -0.3 943,083 + -0.5 943,084 - -1.6 943,084 - -1.9 943,084 - -2.1 943,084 - -2.6 943,084 - -2.3 943,088 + +1.6 943,088 + -1.3 943,088 + -0.3 943,089 - -1.8 943,089 - -1.7 943,089 - -1.1 943,141 - -2.6 943,141 - -1.3 943,141 - +0.2 943,162 - +0.1 943,198 + +1.1 943,198 + -1.0 943,198 + +0.3 943,199 - -0.4 943,199 - -2.9 943,199 - -0.5 943,199 - +0.2 943,250 + -0.3 943,250 + -0.7 943,250 + +0.3 943,251 - -0.4 943,251 - -0.7 943,304 + -3.6 943,305 - -1.7 943,360 + Sama_0760 0.12 -3.1 943,360 + Sama_0760 0.12 -2.3 943,360 + Sama_0760 0.12 -2.9 943,361 - Sama_0760 0.12 -2.6 943,361 - Sama_0760 0.12 -2.9 943,422 + Sama_0760 0.19 -1.7 943,445 + Sama_0760 0.22 -2.7 943,445 + Sama_0760 0.22 -3.6 943,445 + Sama_0760 0.22 -1.1 943,445 + Sama_0760 0.22 -1.4 943,445 + Sama_0760 0.22 -1.1 943,445 + Sama_0760 0.22 -2.3 943,445 + Sama_0760 0.22 -3.6 943,446 - Sama_0760 0.22 -1.3 943,446 - Sama_0760 0.22 -4.5 943,464 + Sama_0760 0.25 -1.7 943,474 + Sama_0760 0.26 -1.4 943,475 - Sama_0760 0.26 -3.0 943,572 + Sama_0760 0.38 -4.5 943,623 + Sama_0760 0.44 -3.7 943,623 + Sama_0760 0.44 -1.9 943,624 - Sama_0760 0.44 -2.7 943,660 + Sama_0760 0.49 -2.7 943,749 + Sama_0760 0.59 -2.4 943,824 + Sama_0760 0.69 -2.4 943,824 + Sama_0760 0.69 -2.1 943,939 - Sama_0760 0.83 -2.1 943,961 + Sama_0760 0.85 -2.6 943,977 + Sama_0760 0.87 -0.9 943,977 + Sama_0760 0.87 -3.3 943,977 + Sama_0760 0.87 -3.6 943,978 - Sama_0760 0.88 -2.3 943,978 - Sama_0760 0.88 -2.3 943,978 - Sama_0760 0.88 -4.7 943,978 - Sama_0760 0.88 -1.2 943,983 + Sama_0760 0.88 -2.7 943,983 + Sama_0760 0.88 -2.4 943,983 + Sama_0760 0.88 -2.4 943,983 + Sama_0760 0.88 -2.6 943,984 - Sama_0760 0.88 -3.7 943,984 - Sama_0760 0.88 -2.9 944,020 + -2.3 944,020 + -1.7 944,020 + -2.7 944,020 + -3.1 944,021 - -3.0 944,021 - -3.1 944,023 + +0.7 944,023 + +1.6 944,024 - -1.4 944,024 - -2.3 944,024 - -3.7 944,024 - -2.4 944,026 + +0.9 944,026 + +0.2 944,026 + +0.2 944,026 + +0.9 944,026 + -1.5 944,026 + -0.7 944,026 + +0.5 944,027 - -2.8 944,027 - -1.1 944,027 - -1.1 944,027 - -2.6 944,027 - -1.3 944,027 - -1.4 944,027 - -2.0 944,027 - -1.4 944,027 - -1.8 944,032 + -0.6 944,032 + +0.1 944,032 + -0.0 944,032 + +0.1 944,033 - -0.7 944,033 - -1.1 944,033 - -2.4 944,033 - -3.0 944,033 - -0.8 944,033 - -1.7 944,033 - +1.4 944,098 + -1.6 944,098 + -3.2 944,099 - -3.1 944,139 - -2.9 944,139 - -2.1 944,220 + Sama_0761 0.14 -0.4 944,228 + Sama_0761 0.15 -0.7 944,228 + Sama_0761 0.15 -2.1 944,228 + Sama_0761 0.15 -2.8 944,228 + Sama_0761 0.15 -2.1 944,229 - Sama_0761 0.15 -1.7 944,263 - Sama_0761 0.18 -2.3 944,277 - Sama_0761 0.19 -3.0 944,277 - Sama_0761 0.19 -2.1 944,305 + Sama_0761 0.22 -1.7 944,305 + Sama_0761 0.22 -1.7 944,306 - Sama_0761 0.22 -2.8 944,391 + Sama_0761 0.30 -3.1 944,438 - Sama_0761 0.35 -1.1 944,453 + Sama_0761 0.36 -4.1 944,453 + Sama_0761 0.36 -3.7 944,454 - Sama_0761 0.36 -1.4 944,454 - Sama_0761 0.36 -3.1 944,454 - Sama_0761 0.36 -2.7 944,454 - Sama_0761 0.36 -1.9 944,465 - Sama_0761 0.37 -3.2 944,507 + Sama_0761 0.41 -1.7 944,507 + Sama_0761 0.41 -3.4 944,508 - Sama_0761 0.41 +0.9 944,508 - Sama_0761 0.41 -1.7 944,508 - Sama_0761 0.41 -2.6 944,508 - Sama_0761 0.41 -2.6 944,519 - Sama_0761 0.42 -1.9 944,532 - Sama_0761 0.44 -1.9 944,629 + Sama_0761 0.53 -4.2 944,650 + Sama_0761 0.55 -1.8 944,650 + Sama_0761 0.55 -2.9 944,651 - Sama_0761 0.55 -4.0 944,665 + Sama_0761 0.56 -2.6 944,665 + Sama_0761 0.56 -2.9 944,666 - Sama_0761 0.57 -2.7 944,666 - Sama_0761 0.57 -4.5 944,828 + Sama_0761 0.72 -2.7 944,829 - Sama_0761 0.72 -2.6 944,840 + Sama_0761 0.73 -3.7 944,840 + Sama_0761 0.73 -3.6 944,840 + Sama_0761 0.73 -1.1 944,841 - Sama_0761 0.73 -2.1 944,882 - Sama_0761 0.77 -3.0 944,882 - Sama_0761 0.77 -1.1 945,059 + -1.4 945,117 + -1.3 945,118 - -0.2 945,137 + -0.1 945,137 + -0.3 945,138 - -0.1 945,139 + +0.5 945,139 + +0.1 945,139 + -0.4 945,139 + -0.2 945,139 + -0.1 945,139 + -1.9 945,139 + -0.4 945,139 + +0.9 945,191 + +0.1 945,192 - -2.3 945,192 - -0.1 945,295 + cobT Sama_0762 0.16 -0.0 945,295 + cobT Sama_0762 0.16 +0.4 945,296 - cobT Sama_0762 0.16 -0.3 945,296 - cobT Sama_0762 0.16 -0.0 945,296 - cobT Sama_0762 0.16 +0.4 945,314 + cobT Sama_0762 0.18 -0.1 945,315 - cobT Sama_0762 0.18 +0.1 945,332 - cobT Sama_0762 0.20 -1.0 945,332 - cobT Sama_0762 0.20 -0.2 945,353 - cobT Sama_0762 0.22 +0.5 945,449 + cobT Sama_0762 0.31 -0.5 945,449 + cobT Sama_0762 0.31 +0.1 945,644 + cobT Sama_0762 0.50 -0.2 945,644 + cobT Sama_0762 0.50 -1.7 945,644 + cobT Sama_0762 0.50 -0.9 945,645 - cobT Sama_0762 0.50 +0.2 945,645 - cobT Sama_0762 0.50 -0.4 945,645 - cobT Sama_0762 0.50 -0.7 945,645 - cobT Sama_0762 0.50 +0.7 945,645 - cobT Sama_0762 0.50 +0.9 945,645 - cobT Sama_0762 0.50 +0.6 945,737 + cobT Sama_0762 0.59 -1.1 945,738 - cobT Sama_0762 0.59 +0.7 945,785 + cobT Sama_0762 0.63 -0.7 945,785 + cobT Sama_0762 0.63 +0.8 945,786 - cobT Sama_0762 0.63 +0.5 945,902 + cobT Sama_0762 0.75 -0.3 945,903 - cobT Sama_0762 0.75 -1.6 945,903 - cobT Sama_0762 0.75 -0.5 945,957 + cobT Sama_0762 0.80 +1.1 945,957 + cobT Sama_0762 0.80 -1.1 945,957 + cobT Sama_0762 0.80 -0.0 945,957 + cobT Sama_0762 0.80 +0.3 945,957 + cobT Sama_0762 0.80 +0.3 945,957 + cobT Sama_0762 0.80 -2.1 945,957 + cobT Sama_0762 0.80 -2.1 945,958 - cobT Sama_0762 0.80 +0.1 945,958 - cobT Sama_0762 0.80 +1.5 945,962 + cobT Sama_0762 0.80 +0.5 945,962 + cobT Sama_0762 0.80 +0.2 945,962 + cobT Sama_0762 0.80 -0.9 945,963 - cobT Sama_0762 0.81 +0.4 945,963 - cobT Sama_0762 0.81 +0.2 945,963 - cobT Sama_0762 0.81 -0.7 945,963 - cobT Sama_0762 0.81 +0.6 945,963 - cobT Sama_0762 0.81 -1.1 946,013 + cobT Sama_0762 0.85 -1.1 946,013 + cobT Sama_0762 0.85 -0.1 946,013 + cobT Sama_0762 0.85 -0.6 946,013 + cobT Sama_0762 0.85 -1.1 946,014 - cobT Sama_0762 0.86 +0.5 946,014 - cobT Sama_0762 0.86 -1.1 946,014 - cobT Sama_0762 0.86 -0.6 946,030 + cobT Sama_0762 0.87 +1.9 946,044 - cobT Sama_0762 0.88 +0.5 946,061 + -0.2 946,062 - -0.2 946,062 - -0.1 946,062 + -0.4 946,110 + +0.2 946,111 - -0.4
Or see this region's nucleotide sequence