Strain Fitness in Shewanella amazonensis SB2B around Sama_0473

Experiment: acetate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0472 and Sama_0473 overlap by 77 nucleotidesSama_0473 and Sama_0474 are separated by 33 nucleotides Sama_0472: Sama_0472 - membrane protein (RefSeq), at 577,837 to 582,384 _0472 Sama_0473: Sama_0473 - carbon-nitrogen family hydrolase (RefSeq), at 582,308 to 583,150 _0473 Sama_0474: Sama_0474 - TldD protein (RefSeq), at 583,184 to 584,632 _0474 Position (kb) 582 583 584Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 581.309 kb on + strand, within Sama_0472at 581.563 kb on - strand, within Sama_0472at 581.563 kb on - strand, within Sama_0472at 581.644 kb on + strand, within Sama_0472at 581.644 kb on + strand, within Sama_0472at 581.644 kb on + strand, within Sama_0472at 581.644 kb on + strand, within Sama_0472at 581.644 kb on + strand, within Sama_0472at 581.645 kb on - strand, within Sama_0472at 581.645 kb on - strand, within Sama_0472at 581.645 kb on - strand, within Sama_0472at 581.645 kb on - strand, within Sama_0472at 581.676 kb on + strand, within Sama_0472at 581.727 kb on + strand, within Sama_0472at 581.728 kb on - strand, within Sama_0472at 581.735 kb on + strand, within Sama_0472at 581.735 kb on + strand, within Sama_0472at 581.735 kb on + strand, within Sama_0472at 581.735 kb on + strand, within Sama_0472at 581.735 kb on + strand, within Sama_0472at 581.735 kb on + strand, within Sama_0472at 581.736 kb on - strand, within Sama_0472at 581.736 kb on - strand, within Sama_0472at 581.736 kb on - strand, within Sama_0472at 581.773 kb on + strand, within Sama_0472at 581.773 kb on + strand, within Sama_0472at 581.774 kb on - strand, within Sama_0472at 581.774 kb on - strand, within Sama_0472at 581.774 kb on - strand, within Sama_0472at 581.774 kb on - strand, within Sama_0472at 581.833 kb on - strand, within Sama_0472at 581.879 kb on + strand, within Sama_0472at 581.879 kb on + strand, within Sama_0472at 581.880 kb on - strand, within Sama_0472at 581.967 kb on + strandat 581.967 kb on + strandat 581.968 kb on - strandat 581.968 kb on - strandat 581.968 kb on - strandat 581.981 kb on + strandat 582.074 kb on + strandat 582.162 kb on - strandat 582.272 kb on + strandat 582.272 kb on + strandat 582.286 kb on + strandat 582.287 kb on - strandat 582.287 kb on - strandat 582.290 kb on + strandat 582.348 kb on + strandat 582.348 kb on + strandat 582.349 kb on - strandat 582.538 kb on - strand, within Sama_0473at 582.538 kb on - strand, within Sama_0473at 582.557 kb on - strand, within Sama_0473at 582.557 kb on - strand, within Sama_0473at 582.587 kb on + strand, within Sama_0473at 582.587 kb on + strand, within Sama_0473at 582.588 kb on - strand, within Sama_0473at 582.589 kb on + strand, within Sama_0473at 582.589 kb on + strand, within Sama_0473at 582.599 kb on + strand, within Sama_0473at 582.599 kb on + strand, within Sama_0473at 582.599 kb on + strand, within Sama_0473at 582.599 kb on + strand, within Sama_0473at 582.599 kb on + strand, within Sama_0473at 582.599 kb on + strand, within Sama_0473at 582.600 kb on - strand, within Sama_0473at 582.600 kb on - strand, within Sama_0473at 582.600 kb on - strand, within Sama_0473at 582.600 kb on - strand, within Sama_0473at 582.600 kb on - strand, within Sama_0473at 582.600 kb on - strand, within Sama_0473at 582.600 kb on - strand, within Sama_0473at 582.600 kb on - strand, within Sama_0473at 582.600 kb on - strand, within Sama_0473at 582.603 kb on + strand, within Sama_0473at 582.603 kb on + strand, within Sama_0473at 582.603 kb on + strand, within Sama_0473at 582.603 kb on + strand, within Sama_0473at 582.603 kb on + strand, within Sama_0473at 582.604 kb on - strand, within Sama_0473at 582.604 kb on - strand, within Sama_0473at 582.604 kb on - strand, within Sama_0473at 582.604 kb on - strand, within Sama_0473at 582.604 kb on - strand, within Sama_0473at 582.636 kb on - strand, within Sama_0473at 582.770 kb on + strand, within Sama_0473at 582.825 kb on + strand, within Sama_0473at 582.826 kb on - strand, within Sama_0473at 582.826 kb on - strand, within Sama_0473at 582.826 kb on - strand, within Sama_0473at 582.879 kb on + strand, within Sama_0473at 582.880 kb on - strand, within Sama_0473at 582.880 kb on - strand, within Sama_0473at 582.880 kb on - strand, within Sama_0473at 582.900 kb on + strand, within Sama_0473at 582.900 kb on + strand, within Sama_0473at 582.918 kb on + strand, within Sama_0473at 582.919 kb on - strand, within Sama_0473at 582.946 kb on + strand, within Sama_0473at 582.946 kb on + strand, within Sama_0473at 582.947 kb on - strand, within Sama_0473at 582.947 kb on - strand, within Sama_0473at 582.950 kb on - strand, within Sama_0473at 582.979 kb on + strand, within Sama_0473at 582.980 kb on - strand, within Sama_0473at 582.980 kb on - strand, within Sama_0473at 583.050 kb on + strand, within Sama_0473at 583.051 kb on - strand, within Sama_0473at 583.051 kb on - strand, within Sama_0473at 583.074 kb on + strandat 583.074 kb on + strandat 583.074 kb on + strandat 583.075 kb on - strandat 583.075 kb on - strandat 583.075 kb on - strandat 583.075 kb on - strandat 583.075 kb on - strandat 583.103 kb on - strandat 583.148 kb on + strandat 583.149 kb on - strandat 583.149 kb on - strandat 583.149 kb on - strandat 583.149 kb on - strandat 583.254 kb on - strandat 583.276 kb on + strandat 583.277 kb on - strandat 583.277 kb on - strandat 583.479 kb on + strand, within Sama_0474at 583.479 kb on + strand, within Sama_0474at 583.479 kb on + strand, within Sama_0474at 583.541 kb on + strand, within Sama_0474at 583.541 kb on + strand, within Sama_0474at 583.542 kb on - strand, within Sama_0474at 583.542 kb on - strand, within Sama_0474at 583.542 kb on - strand, within Sama_0474at 583.542 kb on - strand, within Sama_0474at 583.542 kb on - strand, within Sama_0474at 583.542 kb on - strand, within Sama_0474at 583.613 kb on + strand, within Sama_0474at 583.613 kb on + strand, within Sama_0474at 583.613 kb on + strand, within Sama_0474at 583.614 kb on - strand, within Sama_0474at 583.614 kb on - strand, within Sama_0474at 583.614 kb on - strand, within Sama_0474at 583.615 kb on + strand, within Sama_0474at 583.653 kb on + strand, within Sama_0474at 583.653 kb on + strand, within Sama_0474at 583.653 kb on + strand, within Sama_0474at 583.654 kb on - strand, within Sama_0474at 583.654 kb on - strand, within Sama_0474at 583.753 kb on + strand, within Sama_0474at 583.754 kb on - strand, within Sama_0474at 583.754 kb on - strand, within Sama_0474at 583.900 kb on + strand, within Sama_0474at 583.900 kb on + strand, within Sama_0474at 583.939 kb on - strand, within Sama_0474at 583.939 kb on - strand, within Sama_0474at 584.006 kb on - strand, within Sama_0474at 584.052 kb on + strand, within Sama_0474at 584.053 kb on - strand, within Sama_0474at 584.053 kb on - strand, within Sama_0474at 584.134 kb on - strand, within Sama_0474

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate
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581,309 + Sama_0472 0.76 -0.6
581,563 - Sama_0472 0.82 +0.2
581,563 - Sama_0472 0.82 -1.9
581,644 + Sama_0472 0.84 +0.9
581,644 + Sama_0472 0.84 +0.4
581,644 + Sama_0472 0.84 -0.8
581,644 + Sama_0472 0.84 -1.2
581,644 + Sama_0472 0.84 +1.1
581,645 - Sama_0472 0.84 -0.3
581,645 - Sama_0472 0.84 -0.5
581,645 - Sama_0472 0.84 +0.1
581,645 - Sama_0472 0.84 -0.8
581,676 + Sama_0472 0.84 +0.5
581,727 + Sama_0472 0.86 -0.7
581,728 - Sama_0472 0.86 +0.6
581,735 + Sama_0472 0.86 +0.5
581,735 + Sama_0472 0.86 -1.5
581,735 + Sama_0472 0.86 +0.3
581,735 + Sama_0472 0.86 -0.8
581,735 + Sama_0472 0.86 +0.1
581,735 + Sama_0472 0.86 +1.1
581,736 - Sama_0472 0.86 -0.3
581,736 - Sama_0472 0.86 +0.8
581,736 - Sama_0472 0.86 -0.4
581,773 + Sama_0472 0.87 -0.8
581,773 + Sama_0472 0.87 +0.2
581,774 - Sama_0472 0.87 -1.4
581,774 - Sama_0472 0.87 -1.1
581,774 - Sama_0472 0.87 +0.5
581,774 - Sama_0472 0.87 +0.1
581,833 - Sama_0472 0.88 -1.5
581,879 + Sama_0472 0.89 +1.6
581,879 + Sama_0472 0.89 -0.8
581,880 - Sama_0472 0.89 +1.1
581,967 + +0.5
581,967 + -0.3
581,968 - +1.1
581,968 - -1.5
581,968 - -1.5
581,981 + +0.2
582,074 + -0.5
582,162 - -0.8
582,272 + +0.1
582,272 + -1.1
582,286 + -0.6
582,287 - -0.9
582,287 - -0.1
582,290 + +0.1
582,348 + -2.4
582,348 + -1.8
582,349 - -1.1
582,538 - Sama_0473 0.27 -0.3
582,538 - Sama_0473 0.27 -1.5
582,557 - Sama_0473 0.30 -2.3
582,557 - Sama_0473 0.30 -1.5
582,587 + Sama_0473 0.33 -1.8
582,587 + Sama_0473 0.33 -2.8
582,588 - Sama_0473 0.33 -1.8
582,589 + Sama_0473 0.33 +0.1
582,589 + Sama_0473 0.33 -1.1
582,599 + Sama_0473 0.35 -0.9
582,599 + Sama_0473 0.35 -1.8
582,599 + Sama_0473 0.35 -1.6
582,599 + Sama_0473 0.35 +0.4
582,599 + Sama_0473 0.35 -2.8
582,599 + Sama_0473 0.35 +1.1
582,600 - Sama_0473 0.35 -1.3
582,600 - Sama_0473 0.35 -3.1
582,600 - Sama_0473 0.35 -0.2
582,600 - Sama_0473 0.35 -1.9
582,600 - Sama_0473 0.35 -1.1
582,600 - Sama_0473 0.35 -1.5
582,600 - Sama_0473 0.35 -1.8
582,600 - Sama_0473 0.35 -1.9
582,600 - Sama_0473 0.35 -1.5
582,603 + Sama_0473 0.35 -0.9
582,603 + Sama_0473 0.35 +0.3
582,603 + Sama_0473 0.35 -2.9
582,603 + Sama_0473 0.35 -0.3
582,603 + Sama_0473 0.35 -0.5
582,604 - Sama_0473 0.35 -1.4
582,604 - Sama_0473 0.35 +0.3
582,604 - Sama_0473 0.35 -0.5
582,604 - Sama_0473 0.35 -0.8
582,604 - Sama_0473 0.35 -0.9
582,636 - Sama_0473 0.39 -0.5
582,770 + Sama_0473 0.55 -1.1
582,825 + Sama_0473 0.61 -2.5
582,826 - Sama_0473 0.61 -0.7
582,826 - Sama_0473 0.61 -2.4
582,826 - Sama_0473 0.61 -0.4
582,879 + Sama_0473 0.68 -1.4
582,880 - Sama_0473 0.68 -0.4
582,880 - Sama_0473 0.68 -1.2
582,880 - Sama_0473 0.68 -1.5
582,900 + Sama_0473 0.70 -1.7
582,900 + Sama_0473 0.70 -1.2
582,918 + Sama_0473 0.72 -0.9
582,919 - Sama_0473 0.72 -2.9
582,946 + Sama_0473 0.76 +0.1
582,946 + Sama_0473 0.76 -3.0
582,947 - Sama_0473 0.76 -1.3
582,947 - Sama_0473 0.76 -2.5
582,950 - Sama_0473 0.76 +0.1
582,979 + Sama_0473 0.80 -1.2
582,980 - Sama_0473 0.80 -1.3
582,980 - Sama_0473 0.80 -2.6
583,050 + Sama_0473 0.88 -2.5
583,051 - Sama_0473 0.88 -0.9
583,051 - Sama_0473 0.88 -1.9
583,074 + -0.3
583,074 + +0.1
583,074 + -1.5
583,075 - -2.5
583,075 - -1.9
583,075 - -2.6
583,075 - -2.4
583,075 - -1.5
583,103 - -1.2
583,148 + +0.4
583,149 - -0.2
583,149 - +0.4
583,149 - +1.9
583,149 - +0.4
583,254 - +1.1
583,276 + +0.6
583,277 - -0.3
583,277 - +1.1
583,479 + Sama_0474 0.20 -1.3
583,479 + Sama_0474 0.20 +0.7
583,479 + Sama_0474 0.20 -0.2
583,541 + Sama_0474 0.25 -0.6
583,541 + Sama_0474 0.25 -0.7
583,542 - Sama_0474 0.25 -0.5
583,542 - Sama_0474 0.25 +0.3
583,542 - Sama_0474 0.25 -0.3
583,542 - Sama_0474 0.25 +1.3
583,542 - Sama_0474 0.25 +0.7
583,542 - Sama_0474 0.25 -0.4
583,613 + Sama_0474 0.30 -0.7
583,613 + Sama_0474 0.30 +0.7
583,613 + Sama_0474 0.30 -0.5
583,614 - Sama_0474 0.30 -0.1
583,614 - Sama_0474 0.30 +0.7
583,614 - Sama_0474 0.30 -0.4
583,615 + Sama_0474 0.30 -3.3
583,653 + Sama_0474 0.32 -0.4
583,653 + Sama_0474 0.32 -1.6
583,653 + Sama_0474 0.32 +1.1
583,654 - Sama_0474 0.32 +0.2
583,654 - Sama_0474 0.32 -0.6
583,753 + Sama_0474 0.39 +0.7
583,754 - Sama_0474 0.39 +2.9
583,754 - Sama_0474 0.39 -0.6
583,900 + Sama_0474 0.49 +0.1
583,900 + Sama_0474 0.49 +0.3
583,939 - Sama_0474 0.52 -1.3
583,939 - Sama_0474 0.52 -0.2
584,006 - Sama_0474 0.57 -0.4
584,052 + Sama_0474 0.60 +0.4
584,053 - Sama_0474 0.60 +0.2
584,053 - Sama_0474 0.60 +1.1
584,134 - Sama_0474 0.66 +0.9

Or see this region's nucleotide sequence