Experiment: acetate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0240 and Sama_0241 are separated by 81 nucleotides Sama_0241 and Sama_0242 overlap by 4 nucleotides Sama_0242 and Sama_0243 overlap by 1 nucleotides Sama_0243 and Sama_0244 are separated by 1 nucleotides Sama_0244 and Sama_0245 are separated by 11 nucleotides
Sama_0240: Sama_0240 - hypothetical protein (RefSeq), at 265,558 to 266,529
_0240
Sama_0241: Sama_0241 - cytochrome c-type biogenesis protein CcmE (RefSeq), at 266,611 to 267,099
_0241
Sama_0242: Sama_0242 - heme exporter protein CcmD (RefSeq), at 267,096 to 267,296
_0242
Sama_0243: Sama_0243 - heme exporter protein CcmC (RefSeq), at 267,296 to 268,042
_0243
Sama_0244: Sama_0244 - heme exporter protein CcmB (RefSeq), at 268,044 to 268,730
_0244
Sama_0245: Sama_0245 - cytochrome c biogenesis protein CcmA (RefSeq), at 268,742 to 269,395
_0245
Position (kb) 267
268
269 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 266.336 kb on + strand, within Sama_0240 at 266.336 kb on + strand, within Sama_0240 at 266.336 kb on + strand, within Sama_0240 at 266.336 kb on + strand, within Sama_0240 at 266.337 kb on - strand, within Sama_0240 at 266.410 kb on - strand, within Sama_0240 at 266.420 kb on + strand, within Sama_0240 at 266.420 kb on + strand, within Sama_0240 at 266.420 kb on + strand, within Sama_0240 at 266.420 kb on + strand, within Sama_0240 at 266.420 kb on + strand, within Sama_0240 at 266.421 kb on - strand, within Sama_0240 at 266.438 kb on + strand at 266.450 kb on + strand at 266.458 kb on + strand at 266.458 kb on + strand at 266.458 kb on + strand at 266.458 kb on + strand at 266.459 kb on - strand at 266.459 kb on - strand at 266.459 kb on - strand at 266.459 kb on - strand at 266.459 kb on - strand at 266.459 kb on - strand at 266.459 kb on - strand at 266.459 kb on - strand at 266.460 kb on + strand at 266.461 kb on - strand at 266.461 kb on - strand at 266.461 kb on - strand at 266.463 kb on + strand at 266.463 kb on + strand at 266.463 kb on + strand at 266.463 kb on + strand at 266.463 kb on + strand at 266.463 kb on + strand at 266.463 kb on + strand at 266.463 kb on + strand at 266.464 kb on - strand at 266.464 kb on - strand at 266.464 kb on - strand at 266.464 kb on - strand at 266.464 kb on - strand at 266.464 kb on - strand at 266.464 kb on - strand at 266.467 kb on + strand at 266.467 kb on + strand at 266.467 kb on + strand at 266.468 kb on - strand at 266.468 kb on - strand at 266.494 kb on + strand at 266.512 kb on + strand at 266.512 kb on + strand at 266.512 kb on + strand at 266.512 kb on + strand at 266.513 kb on - strand at 266.513 kb on - strand at 266.513 kb on - strand at 266.513 kb on - strand at 266.513 kb on - strand at 266.513 kb on - strand at 266.560 kb on + strand at 266.560 kb on + strand at 266.560 kb on + strand at 266.560 kb on + strand at 266.560 kb on + strand at 266.560 kb on + strand at 266.560 kb on + strand at 266.560 kb on + strand at 266.560 kb on + strand at 266.560 kb on + strand at 266.560 kb on + strand at 266.560 kb on + strand at 266.561 kb on - strand at 266.561 kb on - strand at 266.561 kb on - strand at 266.561 kb on - strand at 266.561 kb on - strand at 266.561 kb on - strand at 266.561 kb on - strand at 266.561 kb on - strand at 266.561 kb on - strand at 266.561 kb on - strand at 266.561 kb on - strand at 266.562 kb on + strand at 266.562 kb on + strand at 266.562 kb on + strand at 266.562 kb on + strand at 266.563 kb on - strand at 266.563 kb on - strand at 266.563 kb on - strand at 266.563 kb on - strand at 266.563 kb on - strand at 266.563 kb on - strand at 266.563 kb on - strand at 266.640 kb on + strand at 266.640 kb on + strand at 266.640 kb on + strand at 266.641 kb on - strand at 266.642 kb on + strand at 266.642 kb on + strand at 266.643 kb on - strand at 266.643 kb on - strand at 266.643 kb on - strand at 266.665 kb on - strand, within Sama_0241 at 266.665 kb on - strand, within Sama_0241 at 266.696 kb on + strand, within Sama_0241 at 266.696 kb on + strand, within Sama_0241 at 266.740 kb on - strand, within Sama_0241 at 266.767 kb on + strand, within Sama_0241 at 266.768 kb on - strand, within Sama_0241 at 266.768 kb on - strand, within Sama_0241 at 266.768 kb on - strand, within Sama_0241 at 266.813 kb on + strand, within Sama_0241 at 266.813 kb on + strand, within Sama_0241 at 266.814 kb on - strand, within Sama_0241 at 266.814 kb on - strand, within Sama_0241 at 266.908 kb on - strand, within Sama_0241 at 266.914 kb on + strand, within Sama_0241 at 266.915 kb on - strand, within Sama_0241 at 266.922 kb on + strand, within Sama_0241 at 266.987 kb on + strand, within Sama_0241 at 266.997 kb on + strand, within Sama_0241 at 267.006 kb on + strand, within Sama_0241 at 267.006 kb on + strand, within Sama_0241 at 267.006 kb on + strand, within Sama_0241 at 267.007 kb on - strand, within Sama_0241 at 267.018 kb on - strand, within Sama_0241 at 267.018 kb on - strand, within Sama_0241 at 267.084 kb on + strand at 267.084 kb on + strand at 267.189 kb on - strand, within Sama_0242 at 267.215 kb on + strand, within Sama_0242 at 267.222 kb on - strand, within Sama_0242 at 267.230 kb on - strand, within Sama_0242 at 267.244 kb on + strand, within Sama_0242 at 267.244 kb on + strand, within Sama_0242 at 267.245 kb on - strand, within Sama_0242 at 267.245 kb on - strand, within Sama_0242 at 267.245 kb on - strand, within Sama_0242 at 267.245 kb on - strand, within Sama_0242 at 267.245 kb on - strand, within Sama_0242 at 267.254 kb on - strand, within Sama_0242 at 267.270 kb on - strand, within Sama_0242 at 267.270 kb on - strand, within Sama_0242 at 267.302 kb on - strand at 267.418 kb on + strand, within Sama_0243 at 267.418 kb on + strand, within Sama_0243 at 267.418 kb on + strand, within Sama_0243 at 267.435 kb on + strand, within Sama_0243 at 267.519 kb on + strand, within Sama_0243 at 267.520 kb on - strand, within Sama_0243 at 267.606 kb on + strand, within Sama_0243 at 267.606 kb on + strand, within Sama_0243 at 267.627 kb on + strand, within Sama_0243 at 267.784 kb on + strand, within Sama_0243 at 267.805 kb on + strand, within Sama_0243 at 267.806 kb on - strand, within Sama_0243 at 267.829 kb on + strand, within Sama_0243 at 267.829 kb on + strand, within Sama_0243 at 267.830 kb on - strand, within Sama_0243 at 267.831 kb on + strand, within Sama_0243 at 267.831 kb on + strand, within Sama_0243 at 267.831 kb on + strand, within Sama_0243 at 267.831 kb on + strand, within Sama_0243 at 267.831 kb on + strand, within Sama_0243 at 267.831 kb on + strand, within Sama_0243 at 267.831 kb on + strand, within Sama_0243 at 267.832 kb on - strand, within Sama_0243 at 267.832 kb on - strand, within Sama_0243 at 267.868 kb on + strand, within Sama_0243 at 267.900 kb on + strand, within Sama_0243 at 267.901 kb on - strand, within Sama_0243 at 267.901 kb on - strand, within Sama_0243 at 267.901 kb on - strand, within Sama_0243 at 267.946 kb on + strand, within Sama_0243 at 267.978 kb on - strand at 267.978 kb on - strand at 267.992 kb on + strand at 268.000 kb on - strand at 268.028 kb on + strand at 268.029 kb on - strand at 268.043 kb on - strand at 268.045 kb on + strand at 268.045 kb on + strand at 268.046 kb on - strand at 268.046 kb on - strand at 268.049 kb on + strand at 268.050 kb on - strand at 268.050 kb on - strand at 268.119 kb on + strand, within Sama_0244 at 268.119 kb on + strand, within Sama_0244 at 268.120 kb on - strand, within Sama_0244 at 268.120 kb on - strand, within Sama_0244 at 268.120 kb on - strand, within Sama_0244 at 268.122 kb on + strand, within Sama_0244 at 268.142 kb on - strand, within Sama_0244 at 268.142 kb on - strand, within Sama_0244 at 268.147 kb on - strand, within Sama_0244 at 268.201 kb on + strand, within Sama_0244 at 268.202 kb on - strand, within Sama_0244 at 268.202 kb on - strand, within Sama_0244 at 268.202 kb on - strand, within Sama_0244 at 268.212 kb on + strand, within Sama_0244 at 268.213 kb on - strand, within Sama_0244 at 268.215 kb on - strand, within Sama_0244 at 268.216 kb on - strand, within Sama_0244 at 268.231 kb on - strand, within Sama_0244 at 268.241 kb on + strand, within Sama_0244 at 268.242 kb on - strand, within Sama_0244 at 268.242 kb on - strand, within Sama_0244 at 268.245 kb on + strand, within Sama_0244 at 268.245 kb on + strand, within Sama_0244 at 268.245 kb on + strand, within Sama_0244 at 268.246 kb on - strand, within Sama_0244 at 268.246 kb on - strand, within Sama_0244 at 268.269 kb on + strand, within Sama_0244 at 268.269 kb on + strand, within Sama_0244 at 268.270 kb on - strand, within Sama_0244 at 268.270 kb on - strand, within Sama_0244 at 268.270 kb on - strand, within Sama_0244 at 268.270 kb on - strand, within Sama_0244 at 268.270 kb on - strand, within Sama_0244 at 268.298 kb on + strand, within Sama_0244 at 268.330 kb on + strand, within Sama_0244 at 268.330 kb on + strand, within Sama_0244 at 268.331 kb on - strand, within Sama_0244 at 268.331 kb on - strand, within Sama_0244 at 268.331 kb on - strand, within Sama_0244 at 268.439 kb on - strand, within Sama_0244 at 268.439 kb on - strand, within Sama_0244 at 268.456 kb on - strand, within Sama_0244 at 268.539 kb on + strand, within Sama_0244 at 268.573 kb on - strand, within Sama_0244 at 268.573 kb on - strand, within Sama_0244 at 268.689 kb on + strand at 268.689 kb on + strand at 268.690 kb on - strand at 268.709 kb on + strand at 268.715 kb on + strand at 268.716 kb on - strand at 268.716 kb on - strand at 268.716 kb on - strand at 268.744 kb on - strand at 268.744 kb on - strand at 268.745 kb on + strand at 268.745 kb on + strand at 268.745 kb on + strand at 268.745 kb on + strand at 268.745 kb on + strand at 268.745 kb on + strand at 268.745 kb on + strand at 268.746 kb on - strand at 268.746 kb on - strand at 268.746 kb on - strand at 268.746 kb on - strand at 268.746 kb on - strand at 268.746 kb on - strand at 268.755 kb on + strand at 268.756 kb on - strand at 268.897 kb on + strand, within Sama_0245 at 268.980 kb on - strand, within Sama_0245
Per-strain Table
Position Strand Gene LocusTag Fraction acetate remove 266,336 + Sama_0240 0.80 -0.1 266,336 + Sama_0240 0.80 -2.4 266,336 + Sama_0240 0.80 +2.1 266,336 + Sama_0240 0.80 -0.3 266,337 - Sama_0240 0.80 -0.0 266,410 - Sama_0240 0.88 -0.2 266,420 + Sama_0240 0.89 +1.5 266,420 + Sama_0240 0.89 +0.6 266,420 + Sama_0240 0.89 -0.7 266,420 + Sama_0240 0.89 +0.0 266,420 + Sama_0240 0.89 -0.9 266,421 - Sama_0240 0.89 +1.1 266,438 + +0.7 266,450 + -0.1 266,458 + +0.4 266,458 + -0.8 266,458 + +0.3 266,458 + -0.5 266,459 - +0.3 266,459 - +0.3 266,459 - -0.1 266,459 - -1.1 266,459 - +0.6 266,459 - +0.2 266,459 - +1.0 266,459 - +0.7 266,460 + +0.6 266,461 - +0.5 266,461 - +0.6 266,461 - -1.9 266,463 + -0.8 266,463 + -0.0 266,463 + -0.8 266,463 + -0.1 266,463 + -0.1 266,463 + +0.6 266,463 + +1.7 266,463 + -0.2 266,464 - -0.5 266,464 - +0.4 266,464 - -0.1 266,464 - +0.2 266,464 - -0.0 266,464 - +0.3 266,464 - -0.1 266,467 + -0.4 266,467 + +0.2 266,467 + +1.2 266,468 - +0.6 266,468 - +0.7 266,494 + +2.7 266,512 + -1.4 266,512 + +0.2 266,512 + +0.2 266,512 + +0.1 266,513 - -1.3 266,513 - +0.9 266,513 - -0.1 266,513 - +0.7 266,513 - +0.9 266,513 - +0.4 266,560 + +0.2 266,560 + +1.6 266,560 + +0.2 266,560 + +0.6 266,560 + +0.2 266,560 + +0.9 266,560 + +1.0 266,560 + -1.4 266,560 + -0.1 266,560 + -1.0 266,560 + +2.1 266,560 + -0.4 266,561 - -0.2 266,561 - -1.1 266,561 - -0.2 266,561 - -0.5 266,561 - -0.3 266,561 - +0.6 266,561 - +0.5 266,561 - -0.5 266,561 - +0.6 266,561 - +0.1 266,561 - -0.6 266,562 + -0.9 266,562 + -1.0 266,562 + -0.2 266,562 + -0.6 266,563 - +1.7 266,563 - +1.1 266,563 - +0.2 266,563 - +0.2 266,563 - +0.0 266,563 - +1.2 266,563 - +0.1 266,640 + +0.8 266,640 + -0.4 266,640 + +1.2 266,641 - +0.8 266,642 + -1.4 266,642 + +0.3 266,643 - -0.4 266,643 - -0.0 266,643 - +0.2 266,665 - Sama_0241 0.11 -1.6 266,665 - Sama_0241 0.11 -1.9 266,696 + Sama_0241 0.17 -0.8 266,696 + Sama_0241 0.17 -1.8 266,740 - Sama_0241 0.26 -0.4 266,767 + Sama_0241 0.32 +1.2 266,768 - Sama_0241 0.32 -1.4 266,768 - Sama_0241 0.32 +0.6 266,768 - Sama_0241 0.32 -1.8 266,813 + Sama_0241 0.41 -1.1 266,813 + Sama_0241 0.41 +0.2 266,814 - Sama_0241 0.42 -2.2 266,814 - Sama_0241 0.42 -1.5 266,908 - Sama_0241 0.61 -1.1 266,914 + Sama_0241 0.62 -0.4 266,915 - Sama_0241 0.62 -1.8 266,922 + Sama_0241 0.64 -1.4 266,987 + Sama_0241 0.77 -1.1 266,997 + Sama_0241 0.79 -1.1 267,006 + Sama_0241 0.81 -0.8 267,006 + Sama_0241 0.81 -1.1 267,006 + Sama_0241 0.81 -1.1 267,007 - Sama_0241 0.81 -1.6 267,018 - Sama_0241 0.83 -1.2 267,018 - Sama_0241 0.83 -1.4 267,084 + -2.1 267,084 + -0.4 267,189 - Sama_0242 0.46 -1.8 267,215 + Sama_0242 0.59 +1.2 267,222 - Sama_0242 0.63 -3.4 267,230 - Sama_0242 0.67 +0.2 267,244 + Sama_0242 0.74 -1.1 267,244 + Sama_0242 0.74 -1.4 267,245 - Sama_0242 0.74 -1.9 267,245 - Sama_0242 0.74 -1.4 267,245 - Sama_0242 0.74 -2.1 267,245 - Sama_0242 0.74 -1.6 267,245 - Sama_0242 0.74 -0.8 267,254 - Sama_0242 0.79 -0.4 267,270 - Sama_0242 0.87 -1.1 267,270 - Sama_0242 0.87 -2.1 267,302 - -1.8 267,418 + Sama_0243 0.16 +0.2 267,418 + Sama_0243 0.16 -1.6 267,418 + Sama_0243 0.16 -2.1 267,435 + Sama_0243 0.19 +1.2 267,519 + Sama_0243 0.30 -0.4 267,520 - Sama_0243 0.30 -1.1 267,606 + Sama_0243 0.41 -1.4 267,606 + Sama_0243 0.41 -1.1 267,627 + Sama_0243 0.44 -1.4 267,784 + Sama_0243 0.65 -1.1 267,805 + Sama_0243 0.68 -1.1 267,806 - Sama_0243 0.68 -0.8 267,829 + Sama_0243 0.71 +1.2 267,829 + Sama_0243 0.71 -0.4 267,830 - Sama_0243 0.71 +3.2 267,831 + Sama_0243 0.72 -2.4 267,831 + Sama_0243 0.72 -0.4 267,831 + Sama_0243 0.72 -1.1 267,831 + Sama_0243 0.72 -1.8 267,831 + Sama_0243 0.72 -1.6 267,831 + Sama_0243 0.72 -1.1 267,831 + Sama_0243 0.72 -0.8 267,832 - Sama_0243 0.72 -0.8 267,832 - Sama_0243 0.72 -0.4 267,868 + Sama_0243 0.77 +1.2 267,900 + Sama_0243 0.81 +1.2 267,901 - Sama_0243 0.81 -2.1 267,901 - Sama_0243 0.81 +0.6 267,901 - Sama_0243 0.81 -0.4 267,946 + Sama_0243 0.87 -1.9 267,978 - -1.8 267,978 - -1.1 267,992 + -0.4 268,000 - -1.9 268,028 + -0.4 268,029 - +1.2 268,043 - -1.4 268,045 + +0.2 268,045 + -2.7 268,046 - -0.4 268,046 - -1.4 268,049 + -1.4 268,050 - -1.6 268,050 - -1.1 268,119 + Sama_0244 0.11 -0.6 268,119 + Sama_0244 0.11 -0.4 268,120 - Sama_0244 0.11 -0.8 268,120 - Sama_0244 0.11 -1.1 268,120 - Sama_0244 0.11 -0.8 268,122 + Sama_0244 0.11 -1.6 268,142 - Sama_0244 0.14 -0.4 268,142 - Sama_0244 0.14 +0.2 268,147 - Sama_0244 0.15 -0.8 268,201 + Sama_0244 0.23 -0.4 268,202 - Sama_0244 0.23 -1.4 268,202 - Sama_0244 0.23 -1.4 268,202 - Sama_0244 0.23 -1.4 268,212 + Sama_0244 0.24 -2.1 268,213 - Sama_0244 0.25 +0.2 268,215 - Sama_0244 0.25 -1.1 268,216 - Sama_0244 0.25 -0.8 268,231 - Sama_0244 0.27 +0.5 268,241 + Sama_0244 0.29 +0.8 268,242 - Sama_0244 0.29 -0.8 268,242 - Sama_0244 0.29 -0.8 268,245 + Sama_0244 0.29 -1.8 268,245 + Sama_0244 0.29 -0.8 268,245 + Sama_0244 0.29 -1.4 268,246 - Sama_0244 0.29 -0.4 268,246 - Sama_0244 0.29 -2.2 268,269 + Sama_0244 0.33 +0.2 268,269 + Sama_0244 0.33 +0.2 268,270 - Sama_0244 0.33 -0.8 268,270 - Sama_0244 0.33 -1.1 268,270 - Sama_0244 0.33 +0.2 268,270 - Sama_0244 0.33 +0.2 268,270 - Sama_0244 0.33 -2.7 268,298 + Sama_0244 0.37 -1.4 268,330 + Sama_0244 0.42 -0.4 268,330 + Sama_0244 0.42 -1.1 268,331 - Sama_0244 0.42 -2.2 268,331 - Sama_0244 0.42 -2.6 268,331 - Sama_0244 0.42 -0.4 268,439 - Sama_0244 0.57 -1.1 268,439 - Sama_0244 0.57 +0.2 268,456 - Sama_0244 0.60 -1.1 268,539 + Sama_0244 0.72 -1.8 268,573 - Sama_0244 0.77 +0.6 268,573 - Sama_0244 0.77 -2.4 268,689 + -1.1 268,689 + -1.1 268,690 - -0.4 268,709 + -1.1 268,715 + -1.6 268,716 - -1.1 268,716 - -1.6 268,716 - +0.9 268,744 - +1.2 268,744 - -1.8 268,745 + -2.5 268,745 + -2.4 268,745 + -0.8 268,745 + -1.8 268,745 + -1.4 268,745 + -1.6 268,745 + -1.6 268,746 - -0.8 268,746 - +1.2 268,746 - -1.1 268,746 - -1.1 268,746 - -1.8 268,746 - -0.8 268,755 + -1.1 268,756 - +0.6 268,897 + Sama_0245 0.24 -1.6 268,980 - Sama_0245 0.36 -1.1
Or see this region's nucleotide sequence