Strain Fitness in Shewanella loihica PV-4 around Shew_3246

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,882,545	-		Shew_3245	0.72	+0.2
3,882,563	-		Shew_3245	0.74	-0.3
3,882,705	+		Shew_3245	0.90	+0.1
3,882,713	-				-0.0
3,882,713	-				-3.0
3,882,749	+				-0.8
3,882,749	+				-1.1
3,882,757	+				-0.2
3,882,757	-				+0.3
3,882,757	-				-0.2
3,882,757	-				+0.0
3,882,764	+				-0.1
3,882,765	-				-1.1
3,882,767	+				+0.8
3,882,767	+				+1.4
3,882,767	+				+0.6
3,882,772	-				+0.2
3,882,775	-				-0.9
3,882,775	-				+0.1
3,882,775	-				+0.0
3,882,775	-				-0.1
3,882,775	-				-0.6
3,882,777	-				+0.2
3,882,779	+				+0.9
3,882,779	+				+1.3
3,882,785	-				+0.2
3,882,824	-				-0.1
3,882,831	-				-0.3
3,882,834	-				-0.0
3,882,878	+				+0.1
3,882,878	+				+0.3
3,882,878	+				-1.9
3,882,878	+				+0.5
3,882,878	+				+0.2
3,882,878	+				+0.3
3,882,878	+				+1.7
3,882,878	+				+2.5
3,882,886	-				-0.1
3,882,886	-				-0.1
3,882,886	-				+0.1
3,882,886	-				+0.1
3,882,886	-				+0.3
3,882,886	-				-0.4
3,882,886	-				-1.6
3,882,886	-				-0.2
3,882,886	-				-0.3
3,882,886	-				-0.3
3,882,888	+				+0.2
3,882,935	+				+0.1
3,882,958	+				+1.9
3,882,981	-				+0.0
3,882,987	-				+1.2
3,882,989	-				+0.4
3,883,001	+				+1.2
3,883,061	+				+0.1
3,883,061	+				-1.5
3,883,061	+				+0.4
3,883,061	+				+0.2
3,883,061	+				+1.6
3,883,278	-				-0.5
3,883,319	+				-1.5
3,883,362	+				+0.1
3,883,362	+				-0.5
3,883,362	+				+0.3
3,883,362	+				+0.0
3,883,362	+				+0.3
3,883,362	+				+0.0
3,883,363	+				+0.2
3,883,370	-				+0.5
3,883,370	-				+0.6
3,883,370	-				-0.4
3,883,370	-				+0.1
3,883,388	+				-2.6
3,883,388	+				-0.8
3,883,388	+				-0.7
3,883,388	+				-0.6
3,883,388	+				-0.2
3,883,388	+				-1.1
3,883,388	+				+0.6
3,883,388	+				-2.2
3,883,388	+				-0.2
3,883,388	+				+0.7
3,883,393	+				-0.1
3,883,395	+				+0.0
3,883,396	-				+0.2
3,883,396	-				+0.4
3,883,396	-				+0.2
3,883,396	-				-0.6
3,883,396	-				+0.4
3,883,396	-				-0.8
3,883,396	-				-1.1
3,883,396	-				-1.3
3,883,396	-				-0.1
3,883,396	-				+0.4
3,883,403	-				-3.1
3,883,407	+				+0.3
3,883,415	-				+0.9
3,883,456	-		Shew_3246	0.15	+1.0
3,883,481	-		Shew_3246	0.19	-0.2
3,883,809	+		Shew_3246	0.67	+0.1
3,883,855	+		Shew_3246	0.74	-0.7
3,883,863	-		Shew_3246	0.75	+0.8
3,883,946	-		Shew_3246	0.87	-0.8
3,883,951	-		Shew_3246	0.88	+0.3
3,884,000	-				+0.1
3,884,038	+				-0.6
3,884,046	-				+2.4
3,884,046	-				-0.3
3,884,105	-				+0.6
3,884,542	-				-0.8
3,884,888	+		Shew_3247	0.64	+0.1