Strain Fitness in Shewanella loihica PV-4 around Shew_3167

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3166 and Shew_3167 are separated by 528 nucleotidesShew_3167 and Shew_3168 are separated by 516 nucleotides Shew_3166: Shew_3166 - extracellular solute-binding protein (RefSeq), at 3,769,352 to 3,770,080 _3166 Shew_3167: Shew_3167 - hypothetical protein (RefSeq), at 3,770,609 to 3,770,854 _3167 Shew_3168: Shew_3168 - hypothetical protein (RefSeq), at 3,771,371 to 3,772,087 _3168 Position (kb) 3770 3771Strain fitness (log2 ratio) -3 -2 -1 0 1at 3770.122 kb on + strandat 3770.130 kb on - strandat 3770.245 kb on - strandat 3770.245 kb on - strandat 3770.245 kb on - strandat 3770.642 kb on - strand, within Shew_3167at 3770.829 kb on - strand, within Shew_3167at 3770.864 kb on - strandat 3770.950 kb on + strandat 3770.958 kb on - strandat 3771.025 kb on - strandat 3771.246 kb on - strandat 3771.246 kb on + strandat 3771.752 kb on - strand, within Shew_3168at 3771.752 kb on - strand, within Shew_3168

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,770,122 + -2.8
3,770,130 - -0.7
3,770,245 - +0.6
3,770,245 - +1.5
3,770,245 - +0.3
3,770,642 - Shew_3167 0.13 -0.0
3,770,829 - Shew_3167 0.89 -1.7
3,770,864 - +0.4
3,770,950 + -0.3
3,770,958 - -0.1
3,771,025 - +0.0
3,771,246 - +0.1
3,771,246 + -1.2
3,771,752 - Shew_3168 0.53 +0.1
3,771,752 - Shew_3168 0.53 -0.5

Or see this region's nucleotide sequence