Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2986 and Shew_2987 are separated by 200 nucleotides Shew_2987 and Shew_2988 are separated by 79 nucleotides
Shew_2986: Shew_2986 - 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase (RefSeq), at 3,543,846 to 3,546,125
_2986
Shew_2987: Shew_2987 - LysR family transcriptional regulator (RefSeq), at 3,546,326 to 3,547,225
_2987
Shew_2988: Shew_2988 - putative signal transduction protein (RefSeq), at 3,547,305 to 3,548,030
_2988
Position (kb)
3546
3547
3548 Strain fitness (log2 ratio)
-1
0
1 at 3545.504 kb on + strand, within Shew_2986 at 3545.658 kb on - strand, within Shew_2986 at 3545.820 kb on + strand, within Shew_2986 at 3545.984 kb on - strand at 3546.090 kb on - strand at 3546.581 kb on + strand, within Shew_2987 at 3546.773 kb on - strand, within Shew_2987 at 3546.891 kb on - strand, within Shew_2987 at 3547.010 kb on + strand, within Shew_2987 at 3547.202 kb on - strand at 3547.352 kb on + strand at 3547.391 kb on + strand, within Shew_2988 at 3547.451 kb on + strand, within Shew_2988 at 3547.451 kb on + strand, within Shew_2988 at 3547.762 kb on + strand, within Shew_2988
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,545,504 + Shew_2986 0.73 -0.2 3,545,658 - Shew_2986 0.79 -0.7 3,545,820 + Shew_2986 0.87 +0.3 3,545,984 - +0.2 3,546,090 - -0.7 3,546,581 + Shew_2987 0.28 -0.5 3,546,773 - Shew_2987 0.50 -0.2 3,546,891 - Shew_2987 0.63 -0.1 3,547,010 + Shew_2987 0.76 -0.9 3,547,202 - -1.1 3,547,352 + -0.1 3,547,391 + Shew_2988 0.12 +0.2 3,547,451 + Shew_2988 0.20 -0.6 3,547,451 + Shew_2988 0.20 -0.5 3,547,762 + Shew_2988 0.63 +0.2
Or see this region's nucleotide sequence