Strain Fitness in Shewanella loihica PV-4 around Shew_2987

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2986 and Shew_2987 are separated by 200 nucleotidesShew_2987 and Shew_2988 are separated by 79 nucleotides Shew_2986: Shew_2986 - 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase (RefSeq), at 3,543,846 to 3,546,125 _2986 Shew_2987: Shew_2987 - LysR family transcriptional regulator (RefSeq), at 3,546,326 to 3,547,225 _2987 Shew_2988: Shew_2988 - putative signal transduction protein (RefSeq), at 3,547,305 to 3,548,030 _2988 Position (kb) 3546 3547 3548Strain fitness (log2 ratio) -1 0 1at 3545.504 kb on + strand, within Shew_2986at 3545.658 kb on - strand, within Shew_2986at 3545.820 kb on + strand, within Shew_2986at 3545.984 kb on - strandat 3546.090 kb on - strandat 3546.581 kb on + strand, within Shew_2987at 3546.773 kb on - strand, within Shew_2987at 3546.891 kb on - strand, within Shew_2987at 3547.010 kb on + strand, within Shew_2987at 3547.202 kb on - strandat 3547.352 kb on + strandat 3547.391 kb on + strand, within Shew_2988at 3547.451 kb on + strand, within Shew_2988at 3547.451 kb on + strand, within Shew_2988at 3547.762 kb on + strand, within Shew_2988

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,545,504 + Shew_2986 0.73 -0.2
3,545,658 - Shew_2986 0.79 -0.7
3,545,820 + Shew_2986 0.87 +0.3
3,545,984 - +0.2
3,546,090 - -0.7
3,546,581 + Shew_2987 0.28 -0.5
3,546,773 - Shew_2987 0.50 -0.2
3,546,891 - Shew_2987 0.63 -0.1
3,547,010 + Shew_2987 0.76 -0.9
3,547,202 - -1.1
3,547,352 + -0.1
3,547,391 + Shew_2988 0.12 +0.2
3,547,451 + Shew_2988 0.20 -0.6
3,547,451 + Shew_2988 0.20 -0.5
3,547,762 + Shew_2988 0.63 +0.2

Or see this region's nucleotide sequence