Strain Fitness in Shewanella loihica PV-4 around Shew_2987
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
3,545,504 | + | Shew_2986 | 0.73 | -0.2 | |
3,545,658 | - | Shew_2986 | 0.79 | -0.7 | |
3,545,820 | + | Shew_2986 | 0.87 | +0.3 | |
3,545,984 | - | +0.2 | |||
3,546,090 | - | -0.7 | |||
3,546,581 | + | Shew_2987 | 0.28 | -0.5 | |
3,546,773 | - | Shew_2987 | 0.50 | -0.2 | |
3,546,891 | - | Shew_2987 | 0.63 | -0.1 | |
3,547,010 | + | Shew_2987 | 0.76 | -0.9 | |
3,547,202 | - | -1.1 | |||
3,547,352 | + | -0.1 | |||
3,547,391 | + | Shew_2988 | 0.12 | +0.2 | |
3,547,451 | + | Shew_2988 | 0.20 | -0.6 | |
3,547,451 | + | Shew_2988 | 0.20 | -0.5 | |
3,547,762 | + | Shew_2988 | 0.63 | +0.2 |
Or see this region's nucleotide sequence