Strain Fitness in Shewanella loihica PV-4 around Shew_2902

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2901 and Shew_2902 are separated by 143 nucleotidesShew_2902 and Shew_2903 are separated by 7 nucleotides Shew_2901: Shew_2901 - phosphoesterase, PA-phosphatase related (RefSeq), at 3,440,234 to 3,440,908 _2901 Shew_2902: Shew_2902 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 3,441,052 to 3,442,491 _2902 Shew_2903: Shew_2903 - hypothetical protein (RefSeq), at 3,442,499 to 3,443,431 _2903 Position (kb) 3441 3442 3443Strain fitness (log2 ratio) -1 0 1at 3440.516 kb on + strand, within Shew_2901at 3440.708 kb on + strand, within Shew_2901at 3442.257 kb on + strand, within Shew_2902at 3442.265 kb on - strand, within Shew_2902at 3442.332 kb on - strand, within Shew_2902at 3442.378 kb on - strandat 3442.448 kb on + strandat 3442.816 kb on - strand, within Shew_2903at 3443.259 kb on - strand, within Shew_2903at 3443.460 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,440,516 + Shew_2901 0.42 +0.0
3,440,708 + Shew_2901 0.70 +0.4
3,442,257 + Shew_2902 0.84 -1.6
3,442,265 - Shew_2902 0.84 -0.3
3,442,332 - Shew_2902 0.89 +0.0
3,442,378 - +0.4
3,442,448 + +0.2
3,442,816 - Shew_2903 0.34 -0.5
3,443,259 - Shew_2903 0.81 -0.2
3,443,460 + -0.6

Or see this region's nucleotide sequence