Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2778 and Shew_2779 are separated by 327 nucleotides Shew_2779 and Shew_2780 are separated by 86 nucleotides Shew_2780 and Shew_2781 are separated by 23 nucleotides
Shew_2778: Shew_2778 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq), at 3,284,738 to 3,287,770
_2778
Shew_2779: Shew_2779 - amino acid ABC transporter (RefSeq), at 3,288,098 to 3,288,907
_2779
Shew_2780: Shew_2780 - thioesterase superfamily protein (RefSeq), at 3,288,994 to 3,289,434
_2780
Shew_2781: Shew_2781 - diguanylate cyclase/phosphodiesterase (RefSeq), at 3,289,458 to 3,290,954
_2781
Position (kb) 3288
3289 Strain fitness (log2 ratio) -1
0
1
2 at 3287.415 kb on + strand, within Shew_2778 at 3287.562 kb on - strand at 3287.916 kb on - strand at 3288.391 kb on + strand, within Shew_2779 at 3288.783 kb on + strand, within Shew_2779 at 3288.791 kb on - strand, within Shew_2779 at 3288.882 kb on + strand at 3288.890 kb on - strand at 3288.890 kb on - strand at 3289.075 kb on + strand, within Shew_2780 at 3289.603 kb on - strand at 3289.801 kb on + strand, within Shew_2781
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,287,415 + Shew_2778 0.88 -0.5 3,287,562 - +0.1 3,287,916 - -0.1 3,288,391 + Shew_2779 0.36 +1.8 3,288,783 + Shew_2779 0.85 +0.2 3,288,791 - Shew_2779 0.86 +0.3 3,288,882 + +0.9 3,288,890 - -0.0 3,288,890 - +0.7 3,289,075 + Shew_2780 0.18 +1.8 3,289,603 - -1.1 3,289,801 + Shew_2781 0.23 -1.0
Or see this region's nucleotide sequence