Strain Fitness in Shewanella loihica PV-4 around Shew_2668

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2667 and Shew_2668 are separated by 134 nucleotidesShew_2668 and Shew_2669 are separated by 108 nucleotides Shew_2667: Shew_2667 - Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ (RefSeq), at 3,150,223 to 3,156,009 _2667 Shew_2668: Shew_2668 - 2-nitropropane dioxygenase, NPD (RefSeq), at 3,156,144 to 3,157,781 _2668 Shew_2669: Shew_2669 - penicillin amidase (RefSeq), at 3,157,890 to 3,160,238 _2669 Position (kb) 3156 3157 3158Strain fitness (log2 ratio) -1 0 1 2at 3155.535 kb on + strandat 3155.651 kb on - strandat 3155.660 kb on + strandat 3155.660 kb on + strandat 3155.784 kb on - strandat 3156.029 kb on - strandat 3156.089 kb on - strandat 3156.089 kb on - strandat 3156.355 kb on - strand, within Shew_2668at 3156.384 kb on - strand, within Shew_2668at 3156.575 kb on + strand, within Shew_2668at 3156.575 kb on + strand, within Shew_2668at 3156.673 kb on + strand, within Shew_2668at 3157.354 kb on + strand, within Shew_2668at 3157.844 kb on - strandat 3158.462 kb on - strand, within Shew_2669

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,155,535 + +2.1
3,155,651 - +1.1
3,155,660 + +1.6
3,155,660 + +1.3
3,155,784 - +2.2
3,156,029 - +2.7
3,156,089 - +1.6
3,156,089 - +1.3
3,156,355 - Shew_2668 0.13 +1.8
3,156,384 - Shew_2668 0.15 +1.6
3,156,575 + Shew_2668 0.26 +1.7
3,156,575 + Shew_2668 0.26 +2.2
3,156,673 + Shew_2668 0.32 +1.0
3,157,354 + Shew_2668 0.74 +1.9
3,157,844 - +0.8
3,158,462 - Shew_2669 0.24 +0.2

Or see this region's nucleotide sequence