Strain Fitness in Shewanella loihica PV-4 around Shew_2365
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
2,765,630 | - | Shew_2364 | 0.43 | -0.2 | |
2,765,868 | + | Shew_2364 | 0.58 | -0.1 | |
2,765,871 | - | Shew_2364 | 0.58 | -0.2 | |
2,765,986 | - | Shew_2364 | 0.66 | -0.2 | |
2,766,051 | - | Shew_2364 | 0.70 | +0.6 | |
2,766,054 | + | Shew_2364 | 0.70 | +1.0 | |
2,766,054 | + | Shew_2364 | 0.70 | +0.2 | |
2,766,290 | + | Shew_2364 | 0.85 | -0.3 | |
2,766,298 | - | Shew_2364 | 0.86 | -0.1 | |
2,766,303 | - | Shew_2364 | 0.86 | -0.5 | |
2,766,504 | - | +0.3 | |||
2,766,783 | + | Shew_2365 | 0.23 | -1.8 | |
2,767,485 | + | -0.2 | |||
2,767,776 | - | Shew_2366 | 0.35 | -1.9 | |
2,768,041 | - | Shew_2366 | 0.60 | +0.3 |
Or see this region's nucleotide sequence