Strain Fitness in Shewanella loihica PV-4 around Shew_2341

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2339 and Shew_2340 are separated by 69 nucleotidesShew_2340 and Shew_2341 are separated by 78 nucleotidesShew_2341 and Shew_2342 overlap by 1 nucleotides Shew_2339: Shew_2339 - hypothetical protein (RefSeq), at 2,733,316 to 2,733,909 _2339 Shew_2340: Shew_2340 - redoxin domain-containing protein (RefSeq), at 2,733,979 to 2,734,476 _2340 Shew_2341: Shew_2341 - two component, sigma54 specific, Fis family transcriptional regulator (RefSeq), at 2,734,555 to 2,735,907 _2341 Shew_2342: Shew_2342 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,735,907 to 2,737,541 _2342 Position (kb) 2734 2735 2736Strain fitness (log2 ratio) -1 0 1 2at 2734.072 kb on - strand, within Shew_2340at 2734.072 kb on - strand, within Shew_2340at 2734.129 kb on - strand, within Shew_2340at 2734.162 kb on - strand, within Shew_2340at 2734.890 kb on - strand, within Shew_2341at 2736.122 kb on + strand, within Shew_2342at 2736.130 kb on - strand, within Shew_2342at 2736.130 kb on - strand, within Shew_2342at 2736.130 kb on - strand, within Shew_2342at 2736.171 kb on - strand, within Shew_2342at 2736.357 kb on + strand, within Shew_2342at 2736.382 kb on + strand, within Shew_2342at 2736.530 kb on + strand, within Shew_2342at 2736.538 kb on - strand, within Shew_2342at 2736.565 kb on - strand, within Shew_2342at 2736.751 kb on + strand, within Shew_2342at 2736.780 kb on + strand, within Shew_2342at 2736.782 kb on + strand, within Shew_2342at 2736.833 kb on + strand, within Shew_2342

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,734,072 - Shew_2340 0.19 -0.5
2,734,072 - Shew_2340 0.19 -0.0
2,734,129 - Shew_2340 0.30 -0.7
2,734,162 - Shew_2340 0.37 +0.6
2,734,890 - Shew_2341 0.25 -0.6
2,736,122 + Shew_2342 0.13 +0.7
2,736,130 - Shew_2342 0.14 -0.1
2,736,130 - Shew_2342 0.14 +1.3
2,736,130 - Shew_2342 0.14 +1.7
2,736,171 - Shew_2342 0.16 +0.3
2,736,357 + Shew_2342 0.28 +2.6
2,736,382 + Shew_2342 0.29 -0.6
2,736,530 + Shew_2342 0.38 -0.2
2,736,538 - Shew_2342 0.39 +0.2
2,736,565 - Shew_2342 0.40 -0.9
2,736,751 + Shew_2342 0.52 +0.1
2,736,780 + Shew_2342 0.53 -1.0
2,736,782 + Shew_2342 0.54 +0.9
2,736,833 + Shew_2342 0.57 +0.3

Or see this region's nucleotide sequence