Strain Fitness in Shewanella loihica PV-4 around Shew_2194

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2193 and Shew_2194 are separated by 429 nucleotidesShew_2194 and Shew_2195 are separated by 12 nucleotides Shew_2193: Shew_2193 - peptidase M22, glycoprotease (RefSeq), at 2,551,763 to 2,552,506 _2193 Shew_2194: Shew_2194 - hypothetical protein (RefSeq), at 2,552,936 to 2,553,853 _2194 Shew_2195: Shew_2195 - NADH dehydrogenase (RefSeq), at 2,553,866 to 2,555,167 _2195 Position (kb) 2552 2553 2554Strain fitness (log2 ratio) -1 0 1at 2552.777 kb on + strandat 2553.567 kb on - strand, within Shew_2194at 2554.361 kb on - strand, within Shew_2195at 2554.407 kb on + strand, within Shew_2195at 2554.407 kb on + strand, within Shew_2195at 2554.415 kb on - strand, within Shew_2195at 2554.455 kb on + strand, within Shew_2195at 2554.491 kb on + strand, within Shew_2195at 2554.499 kb on - strand, within Shew_2195at 2554.620 kb on + strand, within Shew_2195at 2554.758 kb on + strand, within Shew_2195

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,552,777 + +0.3
2,553,567 - Shew_2194 0.69 -0.6
2,554,361 - Shew_2195 0.38 +0.2
2,554,407 + Shew_2195 0.42 -0.6
2,554,407 + Shew_2195 0.42 -0.6
2,554,415 - Shew_2195 0.42 +0.4
2,554,455 + Shew_2195 0.45 +0.7
2,554,491 + Shew_2195 0.48 -0.0
2,554,499 - Shew_2195 0.49 -0.2
2,554,620 + Shew_2195 0.58 -0.8
2,554,758 + Shew_2195 0.69 +0.2

Or see this region's nucleotide sequence