Strain Fitness in Shewanella loihica PV-4 around Shew_2072

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2070 and Shew_2071 overlap by 8 nucleotidesShew_2071 and Shew_2072 are separated by 3 nucleotidesShew_2072 and Shew_2073 are separated by 591 nucleotides Shew_2070: Shew_2070 - electron transport complex protein RnfG (RefSeq), at 2,392,959 to 2,393,597 _2070 Shew_2071: Shew_2071 - SoxR-reducing system protein RsxE (RefSeq), at 2,393,590 to 2,394,288 _2071 Shew_2072: Shew_2072 - endonuclease III (RefSeq), at 2,394,292 to 2,394,933 _2072 Shew_2073: Shew_2073 - lactoylglutathione lyase (RefSeq), at 2,395,525 to 2,395,935 _2073 Position (kb) 2394 2395Strain fitness (log2 ratio) -1 0 1at 2394.672 kb on - strand, within Shew_2072at 2394.676 kb on + strand, within Shew_2072at 2395.372 kb on - strandat 2395.645 kb on + strand, within Shew_2073

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,394,672 - Shew_2072 0.59 -1.6
2,394,676 + Shew_2072 0.60 -0.1
2,395,372 - +0.1
2,395,645 + Shew_2073 0.29 +0.1

Or see this region's nucleotide sequence