Strain Fitness in Shewanella loihica PV-4 around Shew_2012

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_2011 and Shew_R0068 are separated by 180 nucleotidesShew_R0068 and Shew_2012 are separated by 80 nucleotidesShew_2012 and Shew_2013 are separated by 131 nucleotides Shew_2011: Shew_2011 - acriflavin resistance protein (RefSeq), at 2,324,259 to 2,327,441 _2011 Shew_R0068: Shew_R0068 - tRNA-Ser (RefSeq), at 2,327,622 to 2,327,712 _R0068 Shew_2012: Shew_2012 - inner membrane transport protein YdhC (RefSeq), at 2,327,793 to 2,329,085 _2012 Shew_2013: Shew_2013 - putative DNA-binding transcriptional regulator (RefSeq), at 2,329,217 to 2,330,119 _2013 Position (kb) 2327 2328 2329 2330Strain fitness (log2 ratio) -1 0 1at 2327.170 kb on - strandat 2328.150 kb on - strand, within Shew_2012at 2328.159 kb on - strand, within Shew_2012at 2328.364 kb on - strand, within Shew_2012at 2328.551 kb on - strand, within Shew_2012at 2329.593 kb on - strand, within Shew_2013at 2329.924 kb on - strand, within Shew_2013

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
2,327,170 - -1.2
2,328,150 - Shew_2012 0.28 -1.0
2,328,159 - Shew_2012 0.28 -0.6
2,328,364 - Shew_2012 0.44 -0.2
2,328,551 - Shew_2012 0.59 -1.0
2,329,593 - Shew_2013 0.42 -0.3
2,329,924 - Shew_2013 0.78 -0.7

Or see this region's nucleotide sequence