Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1862 and Shew_1863 overlap by 4 nucleotides Shew_1863 and Shew_1864 are separated by 286 nucleotides Shew_1864 and Shew_1865 are separated by 66 nucleotides
Shew_1862: Shew_1862 - succinyl-diaminopimelate desuccinylase (RefSeq), at 2,140,883 to 2,142,013
_1862
Shew_1863: Shew_1863 - arsenate reductase and related (RefSeq), at 2,142,010 to 2,142,354
_1863
Shew_1864: Shew_1864 - glucose-specific PTS system component (RefSeq), at 2,142,641 to 2,143,150
_1864
Shew_1865: Shew_1865 - phosphoenolpyruvate-protein phosphotransferase (RefSeq), at 2,143,217 to 2,144,923
_1865
Position (kb)
2142
2143
2144 Strain fitness (log2 ratio)
-1
0
1 at 2142.647 kb on - strand at 2142.896 kb on + strand, within Shew_1864 at 2143.003 kb on - strand, within Shew_1864 at 2143.069 kb on + strand, within Shew_1864 at 2143.820 kb on - strand, within Shew_1865 at 2143.822 kb on + strand, within Shew_1865 at 2143.895 kb on + strand, within Shew_1865 at 2144.053 kb on - strand, within Shew_1865
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,142,647 - -0.3 2,142,896 + Shew_1864 0.50 -0.8 2,143,003 - Shew_1864 0.71 -0.5 2,143,069 + Shew_1864 0.84 -0.9 2,143,820 - Shew_1865 0.35 +1.4 2,143,822 + Shew_1865 0.35 +0.2 2,143,895 + Shew_1865 0.40 +0.6 2,144,053 - Shew_1865 0.49 +0.9
Or see this region's nucleotide sequence