Strain Fitness in Shewanella loihica PV-4 around Shew_1856

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1854 and Shew_1855 are separated by 104 nucleotidesShew_1855 and Shew_1856 are separated by 30 nucleotidesShew_1856 and Shew_1857 are separated by 84 nucleotides Shew_1854: Shew_1854 - hypothetical protein (RefSeq), at 2,133,350 to 2,134,720 _1854 Shew_1855: Shew_1855 - hypothetical protein (RefSeq), at 2,134,825 to 2,135,091 _1855 Shew_1856: Shew_1856 - 3-deoxy-manno-octulosonate cytidylyltransferase (RefSeq), at 2,135,122 to 2,135,859 _1856 Shew_1857: Shew_1857 - iron-containing alcohol dehydrogenase (RefSeq), at 2,135,944 to 2,137,014 _1857 Position (kb) 2135 2136Strain fitness (log2 ratio) -2 -1 0 1at 2134.254 kb on + strand, within Shew_1854at 2134.291 kb on - strand, within Shew_1854at 2134.857 kb on - strand, within Shew_1855at 2134.902 kb on - strand, within Shew_1855at 2135.979 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,134,254 + Shew_1854 0.66 -1.1
2,134,291 - Shew_1854 0.69 -0.2
2,134,857 - Shew_1855 0.12 +0.4
2,134,902 - Shew_1855 0.29 +0.5
2,135,979 - -2.3

Or see this region's nucleotide sequence