Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1838 and Shew_1839 are separated by 130 nucleotides Shew_1839 and Shew_1840 are separated by 14 nucleotides Shew_1840 and Shew_1841 are separated by 72 nucleotides Shew_1841 and Shew_1842 are separated by 169 nucleotides Shew_1842 and Shew_1843 are separated by 169 nucleotides
Shew_1838: Shew_1838 - DNA replication initiation factor (RefSeq), at 2,115,452 to 2,116,162
_1838
Shew_1839: Shew_1839 - hypothetical protein (RefSeq), at 2,116,293 to 2,116,664
_1839
Shew_1840: Shew_1840 - arsenate reductase (RefSeq), at 2,116,679 to 2,117,041
_1840
Shew_1841: Shew_1841 - peptidase M48, Ste24p (RefSeq), at 2,117,114 to 2,118,571
_1841
Shew_1842: Shew_1842 - SirA family protein (RefSeq), at 2,118,741 to 2,118,962
_1842
Shew_1843: Shew_1843 - hypothetical protein (RefSeq), at 2,119,132 to 2,120,232
_1843
Position (kb)
2117
2118
2119 Strain fitness (log2 ratio)
-2
-1
0
1 at 2116.486 kb on + strand, within Shew_1839 at 2116.486 kb on + strand, within Shew_1839 at 2116.759 kb on + strand, within Shew_1840 at 2116.759 kb on + strand, within Shew_1840 at 2116.767 kb on - strand, within Shew_1840 at 2117.923 kb on - strand, within Shew_1841 at 2118.009 kb on + strand, within Shew_1841 at 2118.017 kb on - strand, within Shew_1841 at 2118.148 kb on + strand, within Shew_1841 at 2118.842 kb on + strand, within Shew_1842 at 2119.479 kb on - strand, within Shew_1843
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,116,486 + Shew_1839 0.52 -1.9 2,116,486 + Shew_1839 0.52 +0.7 2,116,759 + Shew_1840 0.22 +0.5 2,116,759 + Shew_1840 0.22 +0.3 2,116,767 - Shew_1840 0.24 +0.2 2,117,923 - Shew_1841 0.55 -0.6 2,118,009 + Shew_1841 0.61 -0.8 2,118,017 - Shew_1841 0.62 -0.9 2,118,148 + Shew_1841 0.71 -0.1 2,118,842 + Shew_1842 0.45 +0.2 2,119,479 - Shew_1843 0.32 +0.1
Or see this region's nucleotide sequence