Strain Fitness in Shewanella loihica PV-4 around Shew_1436

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntphhA and phhB are separated by 46 nucleotidesphhB and Shew_1437 are separated by 233 nucleotides Shew_1435: phhA - phenylalanine 4-monooxygenase (RefSeq), at 1,649,972 to 1,650,805 phhA Shew_1436: phhB - pterin-4-alpha-carbinolamine dehydratase (RefSeq), at 1,650,852 to 1,651,190 phhB Shew_1437: Shew_1437 - transcriptional regulator, TyrR (RefSeq), at 1,651,424 to 1,652,968 _1437 Position (kb) 1650 1651 1652Strain fitness (log2 ratio) -1 0 1at 1650.898 kb on + strand, within phhBat 1651.142 kb on - strand, within phhBat 1651.505 kb on - strandat 1652.098 kb on - strand, within Shew_1437

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,650,898 + phhB Shew_1436 0.14 -0.4
1,651,142 - phhB Shew_1436 0.86 -0.8
1,651,505 - +0.9
1,652,098 - Shew_1437 0.44 +0.8

Or see this region's nucleotide sequence