Strain Fitness in Shewanella loihica PV-4 around Shew_1273

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_1272 and Shew_1273 are separated by 83 nucleotidesShew_1273 and Shew_1274 are separated by 14 nucleotides Shew_1272: Shew_1272 - uroporphyrin-III C/tetrapyrrole methyltransferase (RefSeq), at 1,470,059 to 1,470,868 _1272 Shew_1273: Shew_1273 - hypothetical protein (RefSeq), at 1,470,952 to 1,471,173 _1273 Shew_1274: Shew_1274 - diguanylate cyclase (RefSeq), at 1,471,188 to 1,472,969 _1274 Position (kb) 1470 1471 1472Strain fitness (log2 ratio) -3 -2 -1 0 1at 1470.102 kb on - strandat 1470.105 kb on + strandat 1470.105 kb on + strandat 1470.105 kb on + strandat 1470.112 kb on - strandat 1470.113 kb on - strandat 1470.113 kb on - strandat 1470.136 kb on + strandat 1470.150 kb on - strand, within Shew_1272at 1470.293 kb on - strand, within Shew_1272at 1470.642 kb on + strand, within Shew_1272at 1470.890 kb on + strandat 1471.114 kb on + strand, within Shew_1273at 1471.378 kb on + strand, within Shew_1274at 1471.446 kb on - strand, within Shew_1274at 1471.862 kb on + strand, within Shew_1274at 1471.945 kb on - strand, within Shew_1274at 1472.164 kb on + strand, within Shew_1274

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
1,470,102 - +0.0
1,470,105 + -1.3
1,470,105 + +0.3
1,470,105 + +0.3
1,470,112 - -0.6
1,470,113 - +1.1
1,470,113 - +0.2
1,470,136 + -0.2
1,470,150 - Shew_1272 0.11 -3.2
1,470,293 - Shew_1272 0.29 +0.5
1,470,642 + Shew_1272 0.72 +0.2
1,470,890 + -0.4
1,471,114 + Shew_1273 0.73 -0.9
1,471,378 + Shew_1274 0.11 -2.9
1,471,446 - Shew_1274 0.14 -0.2
1,471,862 + Shew_1274 0.38 +0.3
1,471,945 - Shew_1274 0.42 +0.1
1,472,164 + Shew_1274 0.55 +0.2

Or see this region's nucleotide sequence