Strain Fitness in Shewanella loihica PV-4 around Shew_1188

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1187 and Shew_1188 are separated by 6 nucleotidesShew_1188 and Shew_1189 are separated by 82 nucleotides Shew_1187: Shew_1187 - riboflavin biosynthesis protein RibD (RefSeq), at 1,379,520 to 1,380,680 _1187 Shew_1188: Shew_1188 - riboflavin synthase subunit alpha (RefSeq), at 1,380,687 to 1,381,352 _1188 Shew_1189: Shew_1189 - 3,4-dihydroxy-2-butanone 4-phosphate synthase (RefSeq), at 1,381,435 to 1,382,538 _1189 Position (kb) 1380 1381 1382Strain fitness (log2 ratio) -1 0 1at 1380.772 kb on - strand, within Shew_1188at 1381.246 kb on + strand, within Shew_1188at 1381.456 kb on - strandat 1381.456 kb on - strandat 1381.697 kb on + strand, within Shew_1189at 1381.765 kb on + strand, within Shew_1189at 1381.879 kb on + strand, within Shew_1189at 1381.905 kb on - strand, within Shew_1189at 1382.036 kb on - strand, within Shew_1189at 1382.074 kb on + strand, within Shew_1189

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,380,772 - Shew_1188 0.13 -1.6
1,381,246 + Shew_1188 0.84 -0.4
1,381,456 - -1.0
1,381,456 - -1.1
1,381,697 + Shew_1189 0.24 -1.1
1,381,765 + Shew_1189 0.30 -1.4
1,381,879 + Shew_1189 0.40 +0.1
1,381,905 - Shew_1189 0.43 -1.3
1,382,036 - Shew_1189 0.54 -1.3
1,382,074 + Shew_1189 0.58 -0.8

Or see this region's nucleotide sequence