Strain Fitness in Shewanella loihica PV-4 around Shew_0966

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0965 and Shew_0966 are separated by 50 nucleotidesShew_0966 and Shew_0967 are separated by 246 nucleotides Shew_0965: Shew_0965 - methylmalonate-semialdehyde dehydrogenase (RefSeq), at 1,107,054 to 1,108,544 _0965 Shew_0966: Shew_0966 - beta alanine--pyruvate transaminase (RefSeq), at 1,108,595 to 1,109,935 _0966 Shew_0967: Shew_0967 - aldehyde dehydrogenase (RefSeq), at 1,110,182 to 1,111,678 _0967 Position (kb) 1108 1109 1110Strain fitness (log2 ratio) -1 0 1at 1107.731 kb on - strand, within Shew_0965at 1107.756 kb on - strand, within Shew_0965at 1107.906 kb on + strand, within Shew_0965at 1107.963 kb on + strand, within Shew_0965at 1108.378 kb on - strand, within Shew_0965at 1108.883 kb on - strand, within Shew_0966at 1109.253 kb on - strand, within Shew_0966at 1109.909 kb on - strandat 1110.323 kb on + strandat 1110.323 kb on + strandat 1110.511 kb on + strand, within Shew_0967at 1110.703 kb on - strand, within Shew_0967

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,107,731 - Shew_0965 0.45 +1.0
1,107,756 - Shew_0965 0.47 -0.0
1,107,906 + Shew_0965 0.57 +0.1
1,107,963 + Shew_0965 0.61 -0.2
1,108,378 - Shew_0965 0.89 +0.1
1,108,883 - Shew_0966 0.21 -0.8
1,109,253 - Shew_0966 0.49 -0.7
1,109,909 - +0.4
1,110,323 + +0.0
1,110,323 + -1.3
1,110,511 + Shew_0967 0.22 +0.3
1,110,703 - Shew_0967 0.35 -0.3

Or see this region's nucleotide sequence