Strain Fitness in Shewanella loihica PV-4 around Shew_0793

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0791 and Shew_0792 are separated by 197 nucleotidesShew_0792 and Shew_0793 are separated by 176 nucleotidesShew_0793 and Shew_0794 are separated by 112 nucleotides Shew_0791: Shew_0791 - spermine synthase (RefSeq), at 903,429 to 904,172 _0791 Shew_0792: Shew_0792 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (RefSeq), at 904,370 to 904,939 _0792 Shew_0793: Shew_0793 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 905,116 to 906,681 _0793 Shew_0794: Shew_0794 - diguanylate cyclase (RefSeq), at 906,794 to 907,978 _0794 Position (kb) 905 906 907Strain fitness (log2 ratio) -3 -2 -1 0 1at 904.523 kb on - strand, within Shew_0792at 904.561 kb on + strand, within Shew_0792at 904.569 kb on - strand, within Shew_0792at 904.722 kb on + strand, within Shew_0792at 904.809 kb on + strand, within Shew_0792at 904.809 kb on + strand, within Shew_0792at 904.817 kb on - strand, within Shew_0792at 904.877 kb on + strand, within Shew_0792at 904.878 kb on + strand, within Shew_0792at 904.892 kb on + strandat 904.892 kb on + strandat 905.437 kb on + strand, within Shew_0793at 905.512 kb on - strand, within Shew_0793at 905.622 kb on + strand, within Shew_0793at 905.664 kb on + strand, within Shew_0793at 905.849 kb on - strand, within Shew_0793at 906.288 kb on - strand, within Shew_0793at 906.720 kb on - strandat 906.720 kb on - strandat 907.226 kb on + strand, within Shew_0794at 907.234 kb on - strand, within Shew_0794at 907.355 kb on - strand, within Shew_0794at 907.614 kb on + strand, within Shew_0794

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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904,523 - Shew_0792 0.27 -1.3
904,561 + Shew_0792 0.34 -1.4
904,569 - Shew_0792 0.35 -1.3
904,722 + Shew_0792 0.62 -2.4
904,809 + Shew_0792 0.77 -2.5
904,809 + Shew_0792 0.77 +0.7
904,817 - Shew_0792 0.78 -2.3
904,877 + Shew_0792 0.89 -1.5
904,878 + Shew_0792 0.89 -1.7
904,892 + -3.1
904,892 + -2.4
905,437 + Shew_0793 0.20 +0.7
905,512 - Shew_0793 0.25 -0.4
905,622 + Shew_0793 0.32 -0.8
905,664 + Shew_0793 0.35 -1.0
905,849 - Shew_0793 0.47 -0.2
906,288 - Shew_0793 0.75 -1.7
906,720 - +0.7
906,720 - -0.4
907,226 + Shew_0794 0.36 -0.0
907,234 - Shew_0794 0.37 +0.0
907,355 - Shew_0794 0.47 +0.7
907,614 + Shew_0794 0.69 +0.2

Or see this region's nucleotide sequence