Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0769 and Shew_0770 are separated by 78 nucleotides Shew_0770 and Shew_0771 are separated by 220 nucleotides
Shew_0769: Shew_0769 - branched-chain amino acid transport system II carrier protein (RefSeq), at 877,699 to 879,030
_0769
Shew_0770: Shew_0770 - tyrosine recombinase XerD (RefSeq), at 879,109 to 880,020
_0770
Shew_0771: Shew_0771 - thiol:disulfide interchange protein DsbC (RefSeq), at 880,241 to 880,966
_0771
Position (kb) 879
880
881 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 878.245 kb on - strand, within Shew_0769 at 878.302 kb on + strand, within Shew_0769 at 878.310 kb on - strand, within Shew_0769 at 878.774 kb on - strand, within Shew_0769 at 878.860 kb on + strand, within Shew_0769 at 878.943 kb on + strand at 879.257 kb on + strand, within Shew_0770 at 879.354 kb on - strand, within Shew_0770 at 879.539 kb on + strand, within Shew_0770 at 879.549 kb on + strand, within Shew_0770 at 879.701 kb on + strand, within Shew_0770 at 879.803 kb on + strand, within Shew_0770 at 879.918 kb on + strand, within Shew_0770 at 879.993 kb on + strand at 880.008 kb on + strand at 880.377 kb on + strand, within Shew_0771 at 880.525 kb on - strand, within Shew_0771 at 880.550 kb on - strand, within Shew_0771 at 880.826 kb on - strand, within Shew_0771 at 880.860 kb on + strand, within Shew_0771 at 880.868 kb on - strand, within Shew_0771 at 880.868 kb on - strand, within Shew_0771
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 878,245 - Shew_0769 0.41 -0.2 878,302 + Shew_0769 0.45 -0.6 878,310 - Shew_0769 0.46 +0.0 878,774 - Shew_0769 0.81 +0.0 878,860 + Shew_0769 0.87 +0.4 878,943 + +0.1 879,257 + Shew_0770 0.16 -4.7 879,354 - Shew_0770 0.27 -3.8 879,539 + Shew_0770 0.47 -3.8 879,549 + Shew_0770 0.48 -2.1 879,701 + Shew_0770 0.65 -3.8 879,803 + Shew_0770 0.76 -1.6 879,918 + Shew_0770 0.89 -1.8 879,993 + -1.5 880,008 + +1.3 880,377 + Shew_0771 0.19 +0.8 880,525 - Shew_0771 0.39 +0.2 880,550 - Shew_0771 0.43 -0.5 880,826 - Shew_0771 0.81 +0.1 880,860 + Shew_0771 0.85 +0.1 880,868 - Shew_0771 0.86 +0.9 880,868 - Shew_0771 0.86 -0.0
Or see this region's nucleotide sequence