Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0580 and Shew_0581 are separated by 140 nucleotides Shew_0581 and Shew_0582 are separated by 97 nucleotides
Shew_0580: Shew_0580 - succinylglutamic semialdehyde dehydrogenase (RefSeq), at 657,575 to 659,038
_0580
Shew_0581: Shew_0581 - hypothetical protein (RefSeq), at 659,179 to 659,979
_0581
Shew_0582: Shew_0582 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 660,077 to 661,414
_0582
Position (kb) 659
660 Strain fitness (log2 ratio) -1
0
1
2
3 at 658.303 kb on + strand, within Shew_0580 at 658.524 kb on - strand, within Shew_0580 at 658.729 kb on + strand, within Shew_0580 at 659.327 kb on + strand, within Shew_0581 at 659.335 kb on - strand, within Shew_0581 at 659.417 kb on - strand, within Shew_0581 at 659.417 kb on - strand, within Shew_0581 at 659.448 kb on + strand, within Shew_0581 at 659.456 kb on - strand, within Shew_0581 at 659.497 kb on - strand, within Shew_0581 at 659.826 kb on + strand, within Shew_0581 at 659.894 kb on + strand, within Shew_0581 at 660.208 kb on - strand at 660.265 kb on + strand, within Shew_0582 at 660.379 kb on + strand, within Shew_0582 at 660.474 kb on - strand, within Shew_0582 at 660.761 kb on + strand, within Shew_0582 at 660.820 kb on + strand, within Shew_0582
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 658,303 + Shew_0580 0.50 +0.4 658,524 - Shew_0580 0.65 +0.6 658,729 + Shew_0580 0.79 +0.4 659,327 + Shew_0581 0.18 +0.3 659,335 - Shew_0581 0.19 +0.1 659,417 - Shew_0581 0.30 +0.4 659,417 - Shew_0581 0.30 -0.1 659,448 + Shew_0581 0.34 +1.1 659,456 - Shew_0581 0.35 +0.8 659,497 - Shew_0581 0.40 +0.4 659,826 + Shew_0581 0.81 +3.5 659,894 + Shew_0581 0.89 +0.3 660,208 - -0.1 660,265 + Shew_0582 0.14 +1.5 660,379 + Shew_0582 0.23 -0.4 660,474 - Shew_0582 0.30 -0.6 660,761 + Shew_0582 0.51 +0.8 660,820 + Shew_0582 0.56 -0.3
Or see this region's nucleotide sequence