Strain Fitness in Shewanella loihica PV-4 around Shew_0526

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0524 and Shew_0525 are separated by 73 nucleotidesShew_0525 and Shew_0526 are separated by 31 nucleotidesShew_0526 and Shew_0527 are separated by 42 nucleotidesShew_0527 and Shew_0528 are separated by 94 nucleotides Shew_0524: Shew_0524 - cytochrome c, class I (RefSeq), at 594,644 to 595,705 _0524 Shew_0525: Shew_0525 - hypothetical protein (RefSeq), at 595,779 to 596,003 _0525 Shew_0526: Shew_0526 - hypothetical protein (RefSeq), at 596,035 to 596,406 _0526 Shew_0527: Shew_0527 - Sel1 domain-containing protein (RefSeq), at 596,449 to 597,303 _0527 Shew_0528: Shew_0528 - Sel1 domain-containing protein (RefSeq), at 597,398 to 598,222 _0528 Position (kb) 596 597Strain fitness (log2 ratio) -2 -1 0 1 2at 595.132 kb on + strand, within Shew_0524at 595.177 kb on + strand, within Shew_0524at 595.378 kb on - strand, within Shew_0524at 595.388 kb on + strand, within Shew_0524at 595.488 kb on - strand, within Shew_0524at 595.492 kb on + strand, within Shew_0524at 595.492 kb on + strand, within Shew_0524at 595.492 kb on + strand, within Shew_0524at 595.500 kb on - strand, within Shew_0524at 595.500 kb on + strand, within Shew_0524at 595.500 kb on - strand, within Shew_0524at 595.530 kb on - strand, within Shew_0524at 595.708 kb on - strandat 595.727 kb on - strandat 595.762 kb on - strandat 596.090 kb on + strand, within Shew_0526at 596.151 kb on + strand, within Shew_0526at 596.273 kb on + strand, within Shew_0526at 596.376 kb on + strandat 596.464 kb on + strandat 596.543 kb on + strand, within Shew_0527at 596.690 kb on - strand, within Shew_0527at 596.791 kb on - strand, within Shew_0527at 596.801 kb on - strand, within Shew_0527at 596.891 kb on - strand, within Shew_0527at 596.917 kb on - strand, within Shew_0527at 597.029 kb on + strand, within Shew_0527at 597.029 kb on + strand, within Shew_0527at 597.226 kb on - strandat 597.236 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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595,132 + Shew_0524 0.46 +0.3
595,177 + Shew_0524 0.50 +0.5
595,378 - Shew_0524 0.69 +0.1
595,388 + Shew_0524 0.70 -0.2
595,488 - Shew_0524 0.79 +0.3
595,492 + Shew_0524 0.80 -0.0
595,492 + Shew_0524 0.80 +0.3
595,492 + Shew_0524 0.80 -0.2
595,500 - Shew_0524 0.81 -0.0
595,500 + Shew_0524 0.81 +0.6
595,500 - Shew_0524 0.81 -0.1
595,530 - Shew_0524 0.83 +0.1
595,708 - -0.0
595,727 - -0.3
595,762 - -2.7
596,090 + Shew_0526 0.15 -0.2
596,151 + Shew_0526 0.31 -0.3
596,273 + Shew_0526 0.64 -1.9
596,376 + +0.4
596,464 + +0.1
596,543 + Shew_0527 0.11 +0.0
596,690 - Shew_0527 0.28 +0.3
596,791 - Shew_0527 0.40 -0.5
596,801 - Shew_0527 0.41 +1.9
596,891 - Shew_0527 0.52 +1.0
596,917 - Shew_0527 0.55 +0.6
597,029 + Shew_0527 0.68 +0.2
597,029 + Shew_0527 0.68 -0.1
597,226 - -2.3
597,236 + +2.0

Or see this region's nucleotide sequence