Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0046 and Shew_0047 are separated by 10 nucleotides Shew_0047 and Shew_0048 are separated by 118 nucleotides
Shew_0046: Shew_0046 - molybdenum cofactor synthesis domain-containing protein (RefSeq), at 56,169 to 57,416
_0046
Shew_0047: Shew_0047 - molybdopterin biosynthesis protein MoeB (RefSeq), at 57,427 to 58,194
_0047
Shew_0048: Shew_0048 - short chain dehydrogenase (RefSeq), at 58,313 to 59,020
_0048
Position (kb) 57
58
59 Strain fitness (log2 ratio) -2
-1
0
1
2 at 56.517 kb on + strand, within Shew_0046 at 56.698 kb on + strand, within Shew_0046 at 56.717 kb on + strand, within Shew_0046 at 56.725 kb on - strand, within Shew_0046 at 57.185 kb on + strand, within Shew_0046 at 57.185 kb on + strand, within Shew_0046 at 57.185 kb on + strand, within Shew_0046 at 57.193 kb on - strand, within Shew_0046 at 57.193 kb on - strand, within Shew_0046 at 57.285 kb on + strand, within Shew_0046 at 57.285 kb on + strand, within Shew_0046 at 57.300 kb on - strand at 57.361 kb on - strand at 57.390 kb on - strand at 57.400 kb on - strand at 57.500 kb on + strand at 57.525 kb on - strand, within Shew_0047 at 57.565 kb on + strand, within Shew_0047 at 57.696 kb on + strand, within Shew_0047 at 57.704 kb on - strand, within Shew_0047 at 57.704 kb on - strand, within Shew_0047 at 57.752 kb on - strand, within Shew_0047 at 58.002 kb on - strand, within Shew_0047 at 58.399 kb on - strand, within Shew_0048 at 58.445 kb on - strand, within Shew_0048 at 58.649 kb on - strand, within Shew_0048 at 58.759 kb on + strand, within Shew_0048 at 58.834 kb on - strand, within Shew_0048 at 58.897 kb on + strand, within Shew_0048 at 58.902 kb on + strand, within Shew_0048 at 58.969 kb on + strand at 59.003 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 56,517 + Shew_0046 0.28 -0.0 56,698 + Shew_0046 0.42 -0.4 56,717 + Shew_0046 0.44 -0.0 56,725 - Shew_0046 0.45 +0.6 57,185 + Shew_0046 0.81 +0.2 57,185 + Shew_0046 0.81 -0.1 57,185 + Shew_0046 0.81 +0.3 57,193 - Shew_0046 0.82 -0.0 57,193 - Shew_0046 0.82 +0.1 57,285 + Shew_0046 0.89 +0.7 57,285 + Shew_0046 0.89 +0.3 57,300 - +0.5 57,361 - +0.5 57,390 - +0.7 57,400 - -0.3 57,500 + +0.6 57,525 - Shew_0047 0.13 +0.6 57,565 + Shew_0047 0.18 +0.8 57,696 + Shew_0047 0.35 +2.1 57,704 - Shew_0047 0.36 -0.0 57,704 - Shew_0047 0.36 +1.2 57,752 - Shew_0047 0.42 -0.5 58,002 - Shew_0047 0.75 +0.2 58,399 - Shew_0048 0.12 +0.4 58,445 - Shew_0048 0.19 -0.2 58,649 - Shew_0048 0.47 +0.5 58,759 + Shew_0048 0.63 -0.5 58,834 - Shew_0048 0.74 +0.5 58,897 + Shew_0048 0.82 +0.4 58,902 + Shew_0048 0.83 +0.1 58,969 + -0.8 59,003 - -1.8
Or see this region's nucleotide sequence