Strain Fitness in Shewanella loihica PV-4 around Shew_0003

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0002 and Shew_0003 are separated by 72 nucleotidesShew_0003 and Shew_0004 are separated by 16 nucleotides Shew_0002: Shew_0002 - DNA polymerase III, beta subunit (RefSeq), at 1,511 to 2,611 _0002 Shew_0003: Shew_0003 - DNA replication and repair protein RecF (RefSeq), at 2,684 to 3,766 _0003 Shew_0004: Shew_0004 - DNA gyrase, B subunit (RefSeq), at 3,783 to 6,200 _0004 Position (kb) 2 3 4Strain fitness (log2 ratio) -2 -1 0 1at 2.626 kb on - strandat 2.965 kb on + strand, within Shew_0003at 3.289 kb on + strand, within Shew_0003at 3.528 kb on + strand, within Shew_0003

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,626 - -0.7
2,965 + Shew_0003 0.26 -1.1
3,289 + Shew_0003 0.56 -1.3
3,528 + Shew_0003 0.78 -2.5

Or see this region's nucleotide sequence