Strain Fitness in Shewanella oneidensis MR-1 around SO2739.1

Experiment: copper (II) chloride 0.64 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntbioF and SO2739.1 are separated by 29 nucleotidesSO2739.1 and bioB overlap by 6 nucleotides SO2739: bioF - 8-amino-7-oxononanoate synthase (NCBI ptt file), at 2,854,284 to 2,855,489 bioF SO2739.1: SO2739.1 - hypothetical protein (NCBI ptt file), at 2,855,519 to 2,855,716 SO2739.1 SO2740: bioB - biotin synthase (NCBI ptt file), at 2,855,711 to 2,856,763 bioB Position (kb) 2855 2856Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2854.637 kb on - strand, within bioFat 2854.637 kb on - strand, within bioFat 2854.732 kb on - strand, within bioFat 2854.766 kb on - strand, within bioFat 2854.999 kb on - strand, within bioFat 2855.110 kb on - strand, within bioFat 2855.112 kb on - strand, within bioFat 2855.311 kb on - strand, within bioFat 2855.426 kb on - strandat 2855.436 kb on - strandat 2855.539 kb on - strand, within SO2739.1at 2855.580 kb on + strand, within SO2739.1at 2855.711 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 0.64 mM
remove
2,854,637 - bioF SO2739 0.29 -3.3
2,854,637 - bioF SO2739 0.29 -2.8
2,854,732 - bioF SO2739 0.37 -1.7
2,854,766 - bioF SO2739 0.40 -2.4
2,854,999 - bioF SO2739 0.59 -1.1
2,855,110 - bioF SO2739 0.68 -1.3
2,855,112 - bioF SO2739 0.69 -1.4
2,855,311 - bioF SO2739 0.85 -0.5
2,855,426 - -4.3
2,855,436 - -2.7
2,855,539 - SO2739.1 0.10 -1.0
2,855,580 + SO2739.1 0.31 -2.9
2,855,711 + -0.2

Or see this region's nucleotide sequence