Strain Fitness in Shewanella oneidensis MR-1 around SO4597

Experiment: copper (II) chloride 0.64 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	copper (II) chloride 0.64 mM
4,787,416	+		SO4594	0.23	-0.7
4,787,416	+		SO4594	0.23	-1.0
4,787,416	+		SO4594	0.23	-0.1
4,787,417	+		SO4594	0.24	-0.7
4,787,418	-		SO4594	0.24	-0.4
4,787,424	+		SO4594	0.25	-1.6
4,787,425	-		SO4594	0.25	-1.0
4,787,432	-		SO4594	0.27	-1.2
4,787,432	-		SO4594	0.27	+0.4
4,787,432	-		SO4594	0.27	-1.2
4,787,432	-		SO4594	0.27	-1.6
4,787,436	+		SO4594	0.28	-0.7
4,787,440	+		SO4594	0.28	-1.1
4,787,444	-		SO4594	0.29	-1.0
4,787,444	-		SO4594	0.29	-1.0
4,787,473	+		SO4594	0.35	-1.2
4,787,525	+		SO4594	0.45	-1.8
4,787,525	+		SO4594	0.45	-0.8
4,787,528	-		SO4594	0.46	-0.8
4,787,544	+		SO4594	0.49	-1.2
4,787,581	-		SO4594	0.57	-0.9
4,787,615	-		SO4594	0.63	-1.7
4,787,625	-		SO4594	0.65	-1.0
4,787,694	+		SO4594	0.79	-1.2
4,787,695	-		SO4594	0.80	-1.0
4,787,695	-		SO4594	0.80	-0.7
4,787,713	-		SO4594	0.83	-0.7
4,787,738	-		SO4594	0.88	-0.8
4,787,745	-		SO4594	0.90	-1.7
4,787,858	-				+0.1
4,787,873	-				-1.2
4,787,875	+				-0.6
4,787,880	+				-0.5
4,787,883	-				-1.2
4,787,898	+				-0.3
4,787,906	-				-1.4
4,787,906	-				-1.4
4,787,906	-				-1.1
4,787,906	-				-1.2
4,787,965	+				-0.7
4,787,965	+				-0.1
4,787,973	-				-1.3
4,788,062	+		SO4596	0.19	+1.7
4,788,067	-		SO4596	0.21	-0.5
4,788,127	+		SO4596	0.44	-0.3
4,788,136	+		SO4596	0.47	-0.0
4,788,145	-		SO4596	0.51	-1.4
4,788,175	+		SO4596	0.62	-0.6
4,788,175	+		SO4596	0.62	-0.6
4,788,267	+				-1.7
4,788,267	+				-1.1
4,788,268	-				-1.2
4,788,275	-				-1.3
4,788,275	-				-1.0
4,788,275	-				-0.8
4,788,275	-				-1.8
4,788,278	+				-0.2
4,788,280	-				-0.9
4,788,303	+				-1.2
4,788,319	+				-2.9
4,788,327	+				-1.1
4,788,327	+				+0.0
4,788,335	-				-1.4
4,788,363	-				-1.4
4,788,377	-				-0.6
4,788,384	+				-1.4
4,788,406	+				-1.3
4,788,406	+				-1.5
4,788,523	+		SO4597	0.11	-2.0
4,788,527	-		SO4597	0.12	-1.5
4,788,552	+		SO4597	0.13	-1.5
4,788,560	-		SO4597	0.14	-3.2
4,788,592	-		SO4597	0.16	-2.1
4,788,617	+		SO4597	0.18	-1.5
4,788,625	+		SO4597	0.19	-1.3
4,788,668	+		SO4597	0.22	-1.5
4,788,715	+		SO4597	0.25	-1.0
4,788,761	-		SO4597	0.28	-1.1
4,788,785	+		SO4597	0.30	-1.7
4,788,829	-		SO4597	0.33	-1.2
4,788,887	+		SO4597	0.37	-1.4
4,788,908	+		SO4597	0.39	-0.7
4,788,916	-		SO4597	0.39	-1.5
4,789,002	+		SO4597	0.45	-0.5
4,789,095	+		SO4597	0.52	-1.2
4,789,100	+		SO4597	0.52	-3.1
4,789,100	+		SO4597	0.52	-2.3
4,789,106	+		SO4597	0.53	-2.2
4,789,108	-		SO4597	0.53	-1.3
4,789,114	-		SO4597	0.53	-1.8
4,789,114	-		SO4597	0.53	-0.2
4,789,114	-		SO4597	0.53	-0.8
4,789,114	-		SO4597	0.53	-1.8
4,789,114	-		SO4597	0.53	-1.1
4,789,253	+		SO4597	0.63	-1.2
4,789,256	+		SO4597	0.63	-0.4
4,789,296	+		SO4597	0.66	-0.7
4,789,298	-		SO4597	0.66	-1.4
4,789,304	-		SO4597	0.66	-0.0
4,789,407	+		SO4597	0.74	-1.3
4,789,407	+		SO4597	0.74	-1.3
4,789,407	+		SO4597	0.74	-1.7
4,789,407	+		SO4597	0.74	-2.4
4,789,415	-		SO4597	0.74	-1.3
4,789,439	+		SO4597	0.76	-1.7
4,789,439	+		SO4597	0.76	-2.4
4,789,439	+		SO4597	0.76	-1.6
4,789,439	+		SO4597	0.76	-1.1
4,789,439	+		SO4597	0.76	-1.0
4,789,439	+		SO4597	0.76	-0.9
4,789,439	+		SO4597	0.76	-2.2
4,789,439	+		SO4597	0.76	-2.7
4,789,439	+		SO4597	0.76	-1.2
4,789,439	+		SO4597	0.76	-1.0
4,789,439	+		SO4597	0.76	-2.7
4,789,439	+		SO4597	0.76	-1.7
4,789,439	+		SO4597	0.76	-1.0
4,789,439	+		SO4597	0.76	-1.5
4,789,439	+		SO4597	0.76	-1.2
4,789,439	+		SO4597	0.76	-1.1
4,789,439	+		SO4597	0.76	-1.7
4,789,447	-		SO4597	0.77	-1.5
4,789,447	-		SO4597	0.77	-1.9
4,789,447	-		SO4597	0.77	-0.3
4,789,447	-		SO4597	0.77	-1.7
4,789,447	-		SO4597	0.77	-1.6
4,789,447	-		SO4597	0.77	-1.1
4,789,447	-		SO4597	0.77	-1.9
4,789,447	-		SO4597	0.77	-2.2
4,789,447	-		SO4597	0.77	-0.8
4,789,447	-		SO4597	0.77	-1.3
4,789,447	-		SO4597	0.77	-1.3
4,789,447	-		SO4597	0.77	-0.9
4,789,447	-		SO4597	0.77	-1.6
4,789,447	-		SO4597	0.77	-1.5
4,789,447	-		SO4597	0.77	-1.3
4,789,447	-		SO4597	0.77	-1.4
4,789,447	-		SO4597	0.77	-0.9
4,789,447	-		SO4597	0.77	-0.9
4,789,447	-		SO4597	0.77	-1.7
4,789,447	-		SO4597	0.77	-2.7
4,789,447	-		SO4597	0.77	-1.7
4,789,447	-		SO4597	0.77	-1.9
4,789,447	-		SO4597	0.77	-1.7
4,789,447	-		SO4597	0.77	-0.4
4,789,447	-		SO4597	0.77	-1.7
4,789,451	+		SO4597	0.77	-1.6
4,789,486	-		SO4597	0.79	-0.9
4,789,492	-		SO4597	0.80	-1.8
4,789,497	+		SO4597	0.80	-2.1
4,789,534	-		SO4597	0.83	-2.2
4,789,645	+				-1.1
4,789,658	-				-1.1
4,789,710	+				-2.3
4,789,719	-				-2.2
4,789,721	+				-2.6
4,789,734	+				-0.5
4,789,740	-				+0.2
4,789,742	-				-0.1
4,789,789	+				-0.0
4,789,826	+				+0.6
4,789,826	+				-0.2
4,789,834	-				-0.4
4,789,870	+				+0.1
4,789,873	+				+1.0
4,789,876	-				+0.3
4,789,876	-				+0.1
4,789,878	-				-0.6
4,789,879	-				+0.8
4,789,879	-				-0.3
4,789,899	-				+0.7
4,790,159	-		SO4598	0.12	-0.0
4,790,159	-		SO4598	0.12	-1.2
4,790,177	+		SO4598	0.12	-0.3
4,790,199	-		SO4598	0.13	+0.5
4,790,211	-		SO4598	0.13	-0.1
4,790,282	+		SO4598	0.16	+0.7
4,790,305	-		SO4598	0.16	-0.3
4,790,338	+		SO4598	0.17	-0.0
4,790,348	+		SO4598	0.18	-0.0
4,790,360	-		SO4598	0.18	-0.1
4,790,402	+		SO4598	0.20	-0.3
4,790,484	+		SO4598	0.22	+0.1
4,790,484	+		SO4598	0.22	+0.3
4,790,484	+		SO4598	0.22	+0.4
4,790,612	+		SO4598	0.26	+0.1
4,790,726	+		SO4598	0.30	-0.5
4,790,744	-		SO4598	0.30	+0.9