Strain Fitness in Shewanella oneidensis MR-1 around SO4594

Experiment: copper (II) chloride 0.64 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	copper (II) chloride 0.64 mM
4,786,301	-				-1.7
4,786,303	+				-1.5
4,786,303	+				-1.1
4,786,309	+				-0.4
4,786,311	-				-1.9
4,786,311	-				-1.0
4,786,311	-				-1.4
4,786,312	-				-1.5
4,786,315	+				-0.8
4,786,320	-				-2.1
4,786,322	-				-1.0
4,786,355	+				-1.2
4,786,355	+				-0.4
4,786,355	+				-1.1
4,786,355	+				-1.8
4,786,355	+				-1.2
4,786,355	+				-1.3
4,786,355	+				-1.4
4,786,363	-				-1.1
4,786,363	-				-1.3
4,786,363	-				-1.3
4,786,363	-				-1.3
4,786,363	-				-1.1
4,786,363	-				-1.4
4,786,363	-				-0.8
4,786,363	-				-1.2
4,786,363	-				-1.1
4,786,390	+		SO4592	0.15	-1.2
4,786,395	+		SO4592	0.16	-1.0
4,786,395	+		SO4592	0.16	-1.9
4,786,395	+		SO4592	0.16	-3.6
4,786,400	+		SO4592	0.18	-1.8
4,786,401	+		SO4592	0.18	-0.2
4,786,402	+		SO4592	0.18	-0.7
4,786,403	-		SO4592	0.18	-1.2
4,786,403	-		SO4592	0.18	-1.1
4,786,403	-		SO4592	0.18	-1.9
4,786,403	-		SO4592	0.18	-1.7
4,786,407	+		SO4592	0.20	-0.1
4,786,407	+		SO4592	0.20	-1.0
4,786,407	+		SO4592	0.20	-2.3
4,786,407	+		SO4592	0.20	-1.8
4,786,407	+		SO4592	0.20	-1.1
4,786,408	-		SO4592	0.20	-1.5
4,786,409	-		SO4592	0.20	-0.6
4,786,428	+		SO4592	0.25	-1.2
4,786,444	-		SO4592	0.30	-1.9
4,786,464	-		SO4592	0.35	-0.8
4,786,470	+		SO4592	0.37	-0.7
4,786,470	+		SO4592	0.37	-1.1
4,786,470	+		SO4592	0.37	-1.7
4,786,470	+		SO4592	0.37	-1.4
4,786,470	+		SO4592	0.37	-0.7
4,786,470	+		SO4592	0.37	+0.5
4,786,475	-		SO4592	0.38	-0.9
4,786,478	-		SO4592	0.39	-2.3
4,786,526	+		SO4592	0.52	-1.6
4,786,526	+		SO4592	0.52	-2.1
4,786,529	+		SO4592	0.53	-0.2
4,786,539	+		SO4592	0.56	-0.9
4,786,547	-		SO4592	0.58	-2.0
4,786,583	+		SO4592	0.68	-1.4
4,786,583	+		SO4592	0.68	-2.1
4,786,594	+		SO4592	0.71	-0.8
4,786,635	-		SO4592	0.82	-2.9
4,786,654	+		SO4592	0.88	-1.4
4,786,655	+		SO4592	0.88	-1.9
4,786,660	+		SO4592	0.89	-1.0
4,786,662	-				-1.9
4,786,663	-				-0.8
4,786,668	-				-0.4
4,786,673	-				-1.0
4,786,680	-				-0.8
4,786,800	+				-2.1
4,786,802	+				-1.8
4,786,805	-				-1.5
4,786,805	-				-1.4
4,786,810	-				-0.8
4,786,810	-				-0.8
4,786,810	-				-1.7
4,786,810	-				-1.3
4,786,812	+				-0.8
4,786,832	+				-0.9
4,786,848	-		SO4593	0.12	-2.2
4,786,852	+		SO4593	0.13	-2.1
4,786,853	-		SO4593	0.13	-1.5
4,786,854	-		SO4593	0.13	-1.6
4,786,862	+		SO4593	0.15	+0.2
4,786,864	+		SO4593	0.16	-1.7
4,786,867	+		SO4593	0.16	-1.7
4,786,881	+		SO4593	0.19	-0.6
4,786,881	+		SO4593	0.19	-1.3
4,786,881	+		SO4593	0.19	-0.3
4,786,881	+		SO4593	0.19	-2.3
4,786,881	+		SO4593	0.19	-1.2
4,786,881	+		SO4593	0.19	-1.3
4,786,889	-		SO4593	0.21	-3.0
4,786,889	-		SO4593	0.21	+0.4
4,786,889	-		SO4593	0.21	+0.1
4,786,890	+		SO4593	0.21	-2.2
4,786,890	+		SO4593	0.21	-1.1
4,786,898	-		SO4593	0.23	-1.2
4,786,898	-		SO4593	0.23	-1.5
4,786,899	+		SO4593	0.23	-1.4
4,786,900	+		SO4593	0.23	-0.8
4,786,900	+		SO4593	0.23	-1.5
4,786,907	-		SO4593	0.25	-1.7
4,786,908	-		SO4593	0.25	-0.2
4,786,914	+		SO4593	0.27	-0.9
4,786,914	+		SO4593	0.27	-1.2
4,786,922	-		SO4593	0.28	-1.0
4,786,939	+		SO4593	0.32	-1.0
4,786,947	+		SO4593	0.34	-0.7
4,786,947	-		SO4593	0.34	-0.2
4,786,952	-		SO4593	0.35	-1.5
4,786,957	+		SO4593	0.36	-2.0
4,786,957	-		SO4593	0.36	-1.4
4,786,964	+		SO4593	0.38	-1.3
4,786,965	+		SO4593	0.38	-2.1
4,786,965	+		SO4593	0.38	-1.5
4,786,970	+		SO4593	0.39	-1.6
4,786,970	+		SO4593	0.39	-1.3
4,786,978	-		SO4593	0.41	-1.1
4,787,015	+		SO4593	0.49	-1.0
4,787,017	+		SO4593	0.49	-0.8
4,787,023	-		SO4593	0.50	-1.4
4,787,032	+		SO4593	0.52	-0.4
4,787,032	+		SO4593	0.52	-2.0
4,787,045	-		SO4593	0.55	-0.8
4,787,075	-		SO4593	0.62	-1.9
4,787,160	+		SO4593	0.80	-2.1
4,787,160	+		SO4593	0.80	-1.3
4,787,168	-		SO4593	0.82	-1.0
4,787,168	-		SO4593	0.82	-1.1
4,787,168	-		SO4593	0.82	-1.2
4,787,168	-		SO4593	0.82	-1.4
4,787,168	-		SO4593	0.82	-1.3
4,787,177	-		SO4593	0.84	-1.2
4,787,182	+		SO4593	0.85	-1.4
4,787,182	+		SO4593	0.85	-1.7
4,787,200	-		SO4593	0.89	-0.9
4,787,251	+				-1.1
4,787,251	+				-1.4
4,787,251	+				-1.7
4,787,251	+				-0.0
4,787,259	-				-0.8
4,787,259	-				-1.7
4,787,261	+				-0.2
4,787,416	+		SO4594	0.23	-0.7
4,787,416	+		SO4594	0.23	-1.0
4,787,416	+		SO4594	0.23	-0.1
4,787,417	+		SO4594	0.24	-0.7
4,787,418	-		SO4594	0.24	-0.4
4,787,424	+		SO4594	0.25	-1.6
4,787,425	-		SO4594	0.25	-1.0
4,787,432	-		SO4594	0.27	-1.2
4,787,432	-		SO4594	0.27	+0.4
4,787,432	-		SO4594	0.27	-1.2
4,787,432	-		SO4594	0.27	-1.6
4,787,436	+		SO4594	0.28	-0.7
4,787,440	+		SO4594	0.28	-1.1
4,787,444	-		SO4594	0.29	-1.0
4,787,444	-		SO4594	0.29	-1.0
4,787,473	+		SO4594	0.35	-1.2
4,787,525	+		SO4594	0.45	-1.8
4,787,525	+		SO4594	0.45	-0.8
4,787,528	-		SO4594	0.46	-0.8
4,787,544	+		SO4594	0.49	-1.2
4,787,581	-		SO4594	0.57	-0.9
4,787,615	-		SO4594	0.63	-1.7
4,787,625	-		SO4594	0.65	-1.0
4,787,694	+		SO4594	0.79	-1.2
4,787,695	-		SO4594	0.80	-1.0
4,787,695	-		SO4594	0.80	-0.7
4,787,713	-		SO4594	0.83	-0.7
4,787,738	-		SO4594	0.88	-0.8
4,787,745	-		SO4594	0.90	-1.7
4,787,858	-				+0.1
4,787,873	-				-1.2
4,787,875	+				-0.6
4,787,880	+				-0.5
4,787,883	-				-1.2
4,787,898	+				-0.3
4,787,906	-				-1.4
4,787,906	-				-1.4
4,787,906	-				-1.1
4,787,906	-				-1.2
4,787,965	+				-0.7
4,787,965	+				-0.1
4,787,973	-				-1.3
4,788,062	+		SO4596	0.19	+1.7
4,788,067	-		SO4596	0.21	-0.5
4,788,127	+		SO4596	0.44	-0.3
4,788,136	+		SO4596	0.47	-0.0
4,788,145	-		SO4596	0.51	-1.4
4,788,175	+		SO4596	0.62	-0.6
4,788,175	+		SO4596	0.62	-0.6
4,788,267	+				-1.7
4,788,267	+				-1.1
4,788,268	-				-1.2
4,788,275	-				-1.3
4,788,275	-				-1.0
4,788,275	-				-0.8
4,788,275	-				-1.8
4,788,278	+				-0.2
4,788,280	-				-0.9
4,788,303	+				-1.2
4,788,319	+				-2.9
4,788,327	+				-1.1
4,788,327	+				+0.0
4,788,335	-				-1.4
4,788,363	-				-1.4
4,788,377	-				-0.6
4,788,384	+				-1.4
4,788,406	+				-1.3
4,788,406	+				-1.5
4,788,523	+		SO4597	0.11	-2.0
4,788,527	-		SO4597	0.12	-1.5
4,788,552	+		SO4597	0.13	-1.5
4,788,560	-		SO4597	0.14	-3.2
4,788,592	-		SO4597	0.16	-2.1
4,788,617	+		SO4597	0.18	-1.5
4,788,625	+		SO4597	0.19	-1.3
4,788,668	+		SO4597	0.22	-1.5
4,788,715	+		SO4597	0.25	-1.0
4,788,761	-		SO4597	0.28	-1.1
4,788,785	+		SO4597	0.30	-1.7